1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttatcttgatttgaaaatggccatatagagaaggtagaaaactggcatgttactcttttctatattatcttttatttctgatgagctataatgattcagGTTGGATCAGTTGCCGTATTTGTATTAAGGCACAAAGACCTTGTGGGAGGTGGTAAAAAAGATTTACAACACATAGCCCAAGTAATTGCCCTCAATATG
species | Glycine max |
transcript | GLYMA08G19760.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGTTCTGCAGAATGCCTGCTGTAGGTGCATCAGGAGCAATTTTTGGACTA GTTGGATCAGTTGCCGTATTTGTATTAAGGCACAAAGACCTTGTGGGAGGTEST: gi|58020307|gb|CX707049.1|CX707049
genomic: GGTTCTGCAGAATGCCTGCTGTAGGTGCATCAGGAGCAATTTTTGGACTAgtaagttatt ... aatgattcagGTTGGATCAGTTGCCGTATTTGTATTAAGGCACAAAGACCTTGTGGGAGGT
EST: GGTTCTGCAGAATGCCTGCTGTAGGTGCATCAGGAGCAATTTTTGGACTA GTTGGATCAGTTGCCGTATTTGTATTAAGGCACAAAGACCTTGTGGGAGGTEST: gi|58016763|gb|CX703505.1|CX703505
genomic: GGTTCTGCAGAATGCCTGCTGTAGGTGCATCAGGAGCAATTTTTGGACTAgtaagttatt ... aatgattcagGTTGGATCAGTTGCCGTATTTGTATTAAGGCACAAAGACCTTGTGGGAGGT
EST: GGTTCTGCAGAATGCCTGCTGTAGGTGCATCAGGAGCAATTTTTGGACTA GTTGGATCAGTTGCCGTATTTGTATTAAGGCACAAAGACCTTGTGGGAGGTEST: gi|22524413|gb|BU083224.1|BU083224
genomic: GGTTCTGCAGAATGCCTGCTGTAGGTGCATCAGGAGCAATTTTTGGACTAgtaagttatt ... aatgattcagGTTGGATCAGTTGCCGTATTTGTATTAAGGCACAAAGACCTTGTGGGAGGT
EST: GGTTCTGCAGAATGCCTGCTGTATGTGCATCATGAGCAATTTTTGGACTA GTTGGATCAGCTGCCGTATTTGTATTAAGGCACAAAGACCTT
genomic: GGTTCTGCAGAATGCCTGCTGTAGGTGCATCAGGAGCAATTTTTGGACTAgtaagttatt ... aatgattcagGTTGGATCAGTTGCCGTATTTGTATTAAGGCACAAAGACCTT
gcatgttactcttttctatattatcttttatttctgatgagctataatgattcagGTTGGATCAGTTGCCGTATTTGTATTAAGGCACAAAGACCTTGTGGGAGGTGGTAAAAAAGATTTACAACACATAGCCCAAGTAATTGCCCTCAATATG
ttctgat putative branch site (score: 3)
ttactcttttctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttatcttgatttgaaaatggccatatagagaaggtagaaaactggcatgttactcttttctatattatcttttatttctgatgagctataatgattcagGTTGGATCAGTTGCCGTATTTGTATTAAGGCACAAAGACCTTGTGGGAGGTGGTAAAAAAGATTTACAACACATAGCCCAAGTAATTGCCCTCAATATG
- - - -tgatttg
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