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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttggaattaagaatctgaatacatgtccgaaatgttgtggagtctttacttgtatactctgtatgttaacag

Basic information

species Glycine max
transcript GLYMA08G19760.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20075473|gb|BQ094256.1|BQ094256
EST:     ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
EST: gi|151406516|gb|EV276331.1|EV276331
EST:     ATATTGCTCAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAGGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
EST: gi|208104251|gb|GD902296.1|GD902296
EST:     AAGGCAAGCTATTATTGTGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: AAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
EST: gi|22525712|gb|BU084523.1|BU084523
EST:     ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
EST: gi|9900560|gb|BE609528.1|BE609528
EST:     ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
EST: gi|58020307|gb|CX707049.1|CX707049
EST:     -TGCACAAAC-TGCAAACCCAAGGCAAGCTATTA-TGTGGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: TTGCAC-AACTTGC-AACCCAAGGCAAGCTATTATTGT-GGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
EST: gi|58016763|gb|CX703505.1|CX703505
EST:     TA-TGCACAAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: TATTGCAC-AACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
EST: gi|22524413|gb|BU083224.1|BU083224
EST:     ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTTATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttggaattaagaatctgaatacatgtccgaaatgttgtggagtctttacttgtatactctgtatgttaacag

- - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG