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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttggaattaagaatctgaatacatgtccgaaatgttgtggagtctttacttgtatactctgtatgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTG

Basic information

species Glycine max
transcript GLYMA08G19760.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19760.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0034g01410.t01 (Vitis vinifera), 3'ss of exon 3
-------gtaactttggaattaagaatctgaatacatgt---ccgaaatgt------tgtggagtctttac--ttgtat--actctgtatgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTG
        ||||     | |  || || ||   || | |     ||||  |      |||||  || || |  ||| ||  |||    |||  ||||||| |||||||| ||||||||||| ||  ||||||| || || || ||||||||||||||||| || || || || ||  ||
gtcagatttaacaagaaactatagtatatgtccacttttattttgaaacttcctatttgtgggctcatttcctttggatcaactaaaaatgcaaacagATTAATAGTCTCATTGACAAAGGGCAGTTTTGGAGGCTGGCTACATCTTCCTTTTTGCATGCAAATATTGGGCATCTGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20075473|gb|BQ094256.1|BQ094256
EST:     ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
EST: gi|151406516|gb|EV276331.1|EV276331
EST:     ATATTGCTCAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAGGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
EST: gi|208104251|gb|GD902296.1|GD902296
EST:     AAGGCAAGCTATTATTGTGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: AAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
EST: gi|22525712|gb|BU084523.1|BU084523
EST:     ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
EST: gi|9900560|gb|BE609528.1|BE609528
EST:     ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
EST: gi|58020307|gb|CX707049.1|CX707049
EST:     -TGCACAAAC-TGCAAACCCAAGGCAAGCTATTA-TGTGGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: TTGCAC-AACTTGC-AACCCAAGGCAAGCTATTATTGT-GGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
EST: gi|58016763|gb|CX703505.1|CX703505
EST:     TA-TGCACAAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: TATTGCAC-AACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
EST: gi|22524413|gb|BU083224.1|BU083224
EST:     ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAG                         ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC
genomic: ATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGgtaactttgg ... atgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatacatgtccgaaatgttgtggagtctttacttgtatactctgtatgttaacagATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTG
                                            tatgttaa  TA-rich tract