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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTGgtcggattctagttaattgtttgaagtttgttttgttatgcctggtttgcttagatcttaaattactacaaattctctgcag

Basic information

species Glycine max
transcript GLYMA08G19760.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19760.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0034g01410.t01 (Vitis vinifera), 5'ss of exon 4
ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTGgtcggattctagt-taattgtttgaagtttgttttgttatgcctggtttgc--ttagatcttaaattactacaaatt---ctctgcag
|| |||||||| ||||||||||| ||  ||||||| || || || ||||||||||||||||| || || || || ||  ||||  | |   ||| | | ||||   | ||| |  | ||||  ||| |||    ||   | ||    |   | | |||   || |||||
ATTAATAGTCTCATTGACAAAGGGCAGTTTTGGAGGCTGGCTACATCTTCCTTTTTGCATGCAAATATTGGGCATCTGATGgtacgctgtgagtcttactgttgctaatttatcgtcttatagctgatttagagtttcttttttgtctgaaagagatttgcctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406516|gb|EV276331.1|EV276331
EST:     GGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTG                         GTAAATTGTTATTCCTTGAACTCAGTTGGTCCTACTGTGGAGAGCTTCAGT
genomic: GGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTGgtcggattct ... ttctctgcagGTAAATTGTTATTCCTTGAACTCAGTTGGTCCTACTGTGGAGAGCTTCAGT
EST: gi|208104251|gb|GD902296.1|GD902296
EST:     GGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTG                         GTAAATTGTTATTCCTTGAACTCAG
genomic: GGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTGgtcggattct ... ttctctgcagGTAAATTGTTATTCCTTGAACTCAG
EST: gi|22525712|gb|BU084523.1|BU084523
EST:     GGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTG                         GTAAATTGTTATTCCTTGAACTCAGTTGGTCCTACTGTGGAGAGCTTCAGT
genomic: GGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTGgtcggattct ... ttctctgcagGTAAATTGTTATTCCTTGAACTCAGTTGGTCCTACTGTGGAGAGCTTCAGT
EST: gi|9900560|gb|BE609528.1|BE609528
EST:     GGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTG                         GTAAATTGTTATTCCTTGAACTCAGTTGGTCCTACTGTGGAGAGCTTCAGT
genomic: GGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTGgtcggattct ... ttctctgcagGTAAATTGTTATTCCTTGAACTCAGTTGGTCCTACTGTGGAGAGCTTCAGT
EST: gi|58020307|gb|CX707049.1|CX707049
EST:     GGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTG                         GTAAATTGTTATTCCTTGAACTCAGTTGGTCCTACTGTGGAGAGCTTCAGT
genomic: GGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTGgtcggattct ... ttctctgcagGTAAATTGTTATTCCTTGAACTCAGTTGGTCCTACTGTGGAGAGCTTCAGT
EST: gi|58016763|gb|CX703505.1|CX703505
EST:     GGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTG                         GTAAATTGTTATTCCTTGAACTCAGTTGGTCCTACTGTGGAGAGCTTCAGT
genomic: GGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTGgtcggattct ... ttctctgcagGTAAATTGTTATTCCTTGAACTCAGTTGGTCCTACTGTGGAGAGCTTCAGT
EST: gi|22524413|gb|BU083224.1|BU083224
EST:     GGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTG                         GTAAATTGTTATTCCTTGAACTCAGCTGGACCTACTGTGGAGAGCTTCACT
genomic: GGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTGgtcggattct ... ttctctgcagGTAAATTGTTATTCCTTGAACTCAGTTGGTCCTACTGTGGAGAGCTTCAGT