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CAAGAGCGGGGGAGATATCTATTTGGCATTTAATGCTCACGATTACTTTGTCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTGgtaagtttttccttttcgctcggggcatttccaaaaataacttctttcaacttgcatacataattacaatgcttagacatagagcactatttatacccat...
species | Glycine max |
transcript | GLYMA06G10540.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: TCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTG GTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCTEST: gi|207813442|gb|GD782941.1|GD782941
genomic: TCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTGgtaagttttt ... gcgtatgcagGTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCT
EST: CAAAGTTCTGCTGCCGGCACCTCCTAAAAAAGAGAAACTGGTTTCGTGTG GTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTEST: gi|208310610|gb|GE104220.1|GE104220
genomic: CAAAGTTCTGCTGCCGGCACCTCC-AAAAAAGAGAAACTGGTTTCGTGTGgtaagttttt ... gcgtatgcagGTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTT
EST: TCGAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTG GTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCTEST: gi|208208486|gb|GE008477.1|GE008477
genomic: TCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTGgtaagttttt ... gcgtatgcagGTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCT
EST: TCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTG GTGGACACTAATCTCAAATEST: gi|193707205|gb|FK644943.1|FK644943
genomic: TCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTGgtaagttttt ... gcgtatgcagGTGGACACTAATCTCAAAT
EST: TCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTG GTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCTEST: gi|207716049|gb|GD698419.1|GD698419
genomic: TCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTGgtaagttttt ... gcgtatgcagGTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCT
EST: TCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTG GTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCTEST: gi|193377305|gb|FK339233.1|FK339233
genomic: TCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTGgtaagttttt ... gcgtatgcagGTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCT
EST: TCAAAGTTCGGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTG GTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCTEST: gi|193467299|gb|FK434372.1|FK434372
genomic: TCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTGgtaagttttt ... gcgtatgcagGTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCT
EST: TCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTG GTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCT
genomic: TCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTGgtaagttttt ... gcgtatgcagGTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGAGCGGGGGAGATATCTATTTGGCATTTAATGCTCACGATTACTTTGTCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTGgtaagtttttccttttcgctcggggcatttccaaaaataacttctttcaacttgcatacataattacaatgcttagacatagagcactatttatacccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaataa