Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCACCGAATACCATGTGGATGGATTTCGATTTGATCTTGCAAGTGTCCTGTGTCGAGGAATTGATGGCTCCCCCCTCAATGCACCCCCACTTATTAGGgtaaataattaatatgcacaagctatatttaatgagttcagttgttattttctaggacacttattgtgcttgtcagttagtttagttcagccatttgaga...

Basic information

species Glycine max
transcript GLYMA06G10540.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10540.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os09g29404.1 (Oryza sativa), 5'ss of exon 12
GGTCACCGAATACCATGTGGATGGATTTCGATTTGATCTTGCAAGTGTCCTGTGTCGAGGAATTGATGGCTCCCCCCTCAATGCACCCCCACTTATTAGGgtaaataattaatatgcacaagctatatttaatgagt--tcagttgttattttctaggacacttattgtgcttg---tcagttagtttagttcagccatttgaga
|||    || || ||  | ||||||||||||||||| ||||||||||| || ||||| |||   ||||| |  || ||  ||||||| ||||| || | ||||  ||||  | ||||| |   ||  ||| |  | |    |  | |   |   ||  |  | | |   |   |   |  ||| || ||  | ||  | ||    
GGTTGAGGAGTATCACATAGATGGATTTCGATTTGACCTTGCAAGTGTTCTTTGTCGTGGACCAGATGGTTGTCCTCTTGATGCACCTCCACTCATCAAGgta--taatgtagatgcagactttaggtttgaacactaaatatgtatggctgcttaccaagcctgtgcagaccgaattttgtttgtctaaataagtgaattt---

upper sequence: GLYMA06G10540.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv18s0001g06520.t01 (Vitis vinifera), 5'ss of exon 13
GGTCACCGAATACCATGTGGATGGATTTCGATTTGATCTTGCAAGTGTCCTGTGTCGAGGAATTGATGGCTCCCCCCTCAATGCACCCCCACTTATTAGGgtaaataattaatatgcaca-agctatatttaatgagttcagttg-ttattttctaggacacttattgtgcttgtcagttagtttagttcagccatt-tgaga
|||||  || || |||||||||||||||||||||||||| || || || || ||||||||||  ||||| || || || ||||| |||||| ||||||||||||   ||  |||| ||   |  || |||  ||     ||| ||  |      ||| |  ||| || |   | |  |  |||||     ||  |   |||  
GGTCATTGAGTATCATGTGGATGGATTTCGATTTGATCTGGCTAGCGTTCTTTGTCGAGGAACAGATGGTTCTCCACTTAATGCTCCCCCAATTATTAGGgtaagccatgtatatacatttaaatacattctatccaaacagatgactgcaacatagcat-ctttttttaaatatatggaagtttgaagaagaaacaatga--