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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTACACCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACTGCCATTAATAATTTTTTgtgggatcaggcaagtttgtaacatcccttttgaccgcttcctactagagactatttcttaatgcattatctttctgctaaatagttggatgcacggaagag

Basic information

species Glycine max
transcript GLYMA06G10540.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10540.1 (Glycine max), 5'ss of exon 17
lower sequence: LOC_Os09g29404.1 (Oryza sativa), 5'ss of exon 19
GGTACACCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACTGCCATTAATAATTTTTTgtgggatcaggcaagtttgtaacatcccttttgaccgcttcctactagagac-tatttcttaatgcattatctttctgc-taaatagtt------ggatgcacggaagag---
      ||||||||| | ||||| ||||||||||| ||||| ||  |||| || |||||||| ||||| |||||||||  ||||||||||||    ||||| ||||     ||     | |  ||||    | || | || ||  |  | ||| | |||     |  | | |   ||| | |||      | || || |  |      
-----CCCAATGATGTTGATGGGCGATGAATATGGTCATACACGTTATGGGAACAACAATAGCTATGGACATGATACTTGCATTAATAATTTCCAATGGGAACAGgttgcattaccgtaactatttta---gttttcaaccaggaatatgtttatgaatttggcagatctatatataatttgttttctccgaatccatgtgaatatag

upper sequence: GLYMA06G10540.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G150796_T02 (Zea mays), 5'ss of exon 19
GGTACACCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACTGCCATTAATAATTTTTTgtgggatcaggc-aagtttgtaacatcccttttgaccgcttcctac-----tagagactatttcttaatgcattatctttctgctaaatagttggatgcacggaagag
      ||||||||||| ||||| ||||||||||| || || ||  ||||||| |||||||| ||||| |||||||||  ||| |||||||||  |||||  ||||     | ||| |  |  || ||      ||  |       |  |    |   | | |     ||   | ||  | |||       |   | |     
-----TCCAATGATGCTGATGGGAGATGAATATGGTCACACACGTTATGGAAACAACAATAGCTATGGACATGATACTCACATAAATAATTTTCAGTGGGGCCAGgttgcatgtgttaattttctgttagtaattttttttagttatgcatgtaacagccttaaatgctaatgtcctctttaattaacatgtatgcag-----

upper sequence: GLYMA06G10540.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G076508_T01 (Zea mays), 5'ss of exon 7
GGTACACCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACTGCCATTAATAATTTTTTgtgggatcaggc-aagtttgtaacatcccttttgaccgcttcctactagagactatttcttaatgcattatctt--tctgctaaatagttgg-atgcacggaagag
      ||||||||||| ||||| ||||||||||| || || ||  ||||||| |||||||| ||||| |||||||||  ||| |||||||||  |||||  ||||  |  | ||| |  |  || ||      ||  |  ||| || |   | | |  || ||||  |  | | |||   | ||   ||| | | |    
-----TCCAATGATGCTGATGGGAGATGAATATGGTCACACGCGTTATGGAAACAACAATAGCTATGGACATGATACTCACATAAATAATTTTCAGTGGGGCCAGgttacatatgttaattttctgttagtaatttatt--tagtga-tgcatgtaacagcgttatgctaatgtcctatccaattaacatgtatgtag---

upper sequence: GLYMA06G10540.1 (Glycine max), 5'ss of exon 17
lower sequence: AT4G09020.1 (Arabidopsis thaliana), 5'ss of exon 20
GGTACACCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACTGCCATTAATAATTTTTTgtgggatcaggcaagtttgtaacatcccttttgaccgcttcctactagagactatttcttaatgcattatctttctgctaaatagttggatgcacggaagag
     |||||||||||||||||| || |||||||| ||||| ||  |||| || |||||||| || || ||||||||  || |||| |||||   |||| |  |||||||| |    | || | |||   |    |    ||      ||| ||  ||| | |    |  |  |   |  ||  || ||        
-----ACCAATGATGCTAATGGGAGACGAATATGGACATACACGGTATGGTAACAACAATAGCTACGGACATGATACCTCCCTTAACAATTTCCAGTGGAAAGAGgcaagtcttacgcctcgcgttttgtcttccctgtttactacggattcctccatgaactgaaatcattttttcttattaaatccag-------

upper sequence: GLYMA06G10540.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv18s0001g06520.t01 (Vitis vinifera), 5'ss of exon 20
GGTACACCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACTGCCATTAATAATTTTTTgtgggatcaggcaagtttgtaacatcccttttgaccgcttcctactagagactatttcttaatgcattatctttctgctaaatagttggatgcacggaagag
     |||||||||||||||||| ||||||||||| || |||||| |||||||||| || |||||||| || |||||||| |||||| ||||| ||||||  |||| ||  |      || | |  |   ||||| ||   | ||  | | |||  ||    || |     |   || | || |  | | || ||  
-----ACCAATGATGCTAATGGGTGATGAATATGGGCACACTCGCTATGGAAATAATAACAGTTATGGACACGATACTGCTATTAATCATTTTCTGTGGGGACAGgtaaagtg-----attcttcctattcgctttct--cacagtttttgtctggataacataaccaatggtgtaacattttg--ggaaggcag--