Sequence
atgc intronic sequence ATGC exonic sequencegtagctcttcttaattcttttcttgaatttattgttcatcaaaacctagtatctttcttggttcttggttttgtagCACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAG
Basic information
species | Glycine max |
transcript | GLYMA06G10540.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G10540.1 (Glycine max), 3'ss of exon 14
lower sequence: AT4G09020.1 (Arabidopsis thaliana), 3'ss of exon 17
gtagctcttcttaattcttttcttgaatttattgttcatcaa-aacctagtatctttcttggttcttg-gttttgtagCACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAG
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gtactttttgatttccaatgtattgattttaaaa--catgaatgagtcagcgctttatgtatctcttctgtatgatagCACAATGAGGCCAATGGAGAAGGAGGAAATGATGGATGTAATGACAATCATAGCTGGAACTGTGGTTTTGAAG
upper sequence: GLYMA06G10540.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv18s0001g06520.t01 (Vitis vinifera), 3'ss of exon 17
gtagctcttcttaattcttttcttgaatttatt--------gttcatcaaaacctagtatctttcttggttcttggttttgt---agCACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAG
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gtagtttcaggcagacatttttttcattttgttttcagtgggttctgtagtgtgcagtctttgtattaattgttggttttgttgtagCACAATAATGCTAATGGAGAGGGTGGAAAGGATGGAACTAATGATAATTTTAGCTGGAATTGTGGTTTTGAAG
upper sequence: GLYMA06G10540.1 (Glycine max), 3'ss of exon 14
lower sequence: EFJ06781 (Selaginella moellendorffii), 3'ss of exon 17
gtagctcttcttaattcttttcttgaatttattgttcatcaaaacctagtatctttcttggttcttggttttgtagCACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAG
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----------gtatgcaaatggcttacgtccttgtt--ttgaaacgcaagggtgacaatg--ttatgaatccttagCACAACGACGCAAATGGGGAGCGTGGACAAGATGGCAGCAATGATAATTTTAGCTGGAATTGTGGAGTAGAAG
upper sequence: GLYMA06G10540.1 (Glycine max), 3'ss of exon 14
lower sequence: EFJ21739 (Selaginella moellendorffii), 3'ss of exon 14
gtagctcttcttaattcttttcttgaatttattgttcatcaaaacctagtatctttcttggttcttggttttgtagCACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAG
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----------gtaagcaaatggcttacgtccttgtt--ttgaaacgcaagggtgacaatg--ttatgaatccttagCACAACGACGCAAATGGGGAGCGTGGACAAGATGGCAGCAATGATAATTTTAGCTGGAATTGTGGAGTAGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgaatttattgttcatcaaaacctagtatctttcttggttcttggttttgtagCACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAG
atttattgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagctcttcttaattcttttcttgaatttattgttcatcaaaacctagtatctttcttggttcttggttttgtagCACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG