Sequence
atgc intronic sequence ATGC exonic sequenceCACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAGgtaatttccaaattgcaatgctttatttgctgtctacagtttagctatgcttgtttagcaatgtggatttgctttttttgggaatgtggaccttacatcg...
Basic information
species | Glycine max |
transcript | GLYMA06G10540.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G10540.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv18s0001g06520.t01 (Vitis vinifera), 5'ss of exon 18
CACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAGgtaatttccaaat-tgcaatgctttatttgctgtctacagtttagctatgctt--gtttagcaatgtggatttgctttttttgggaatgtggaccttacatcg
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CACAATAATGCTAATGGAGAGGGTGGAAAGGATGGAACTAATGATAATTTTAGCTGGAATTGTGGTTTTGAAGgtaaggaccctgtgtgctacttgcatcttaatttcttttcattaattcttttgaaggtctgaagactgaaacacctctatctggagctctaaataagtga---
upper sequence: GLYMA06G10540.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ21739 (Selaginella moellendorffii), 5'ss of exon 15
CACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAGgtaatt---tccaaattgcaatgctttatttgctgtctacagtttagctatgcttgtttagcaatgtggatttgctttttttgggaatgtggaccttacatcg
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CACAACGACGCAAATGGGGAGCGTGGACAAGATGGCAGCAATGATAATTTTAGCTGGAATTGTGGAGTAGAAGgtacttcacttcgccctgaggtcggcaaatttttctaaagagcgcgcgtgtttctgtgcag------------------------------------------
upper sequence: GLYMA06G10540.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ06781 (Selaginella moellendorffii), 5'ss of exon 18
CACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAGgtaatttccaaattgcaatgctttatttgctgtctacagtttagctatgcttgtttagcaatgtggatttgctttttttgggaatgtggaccttacatcg
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CACAACGACGCAAATGGGGAGCGTGGACAAGATGGCAGCAATGATAATTTTAGCTGGAATTGTGGAGTAGAAGgtacttcacttcgccctgaggtcggcaaattttctaaagagcgcgcgtgtttctgt-gcag---------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193372806|gb|FK336540.1|FK336540EST: GAATTGTGGTTTGGAAG GGGAAACTGATGATGCTAGTGTAAGAGCTTTGCGATCACGGCAAATGAAA
genomic: GAATTGTGGTTTGGAAGgtaatttcca ... tgtttgtcagGGGAAACTGATGATGCTAGTGTAAGAGCTTTGCGATCACGGCAAATGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAGgtaatttccaaattgcaatgctttatttgctgtctacagtttagctatgcttgtttagcaatgtggatttgctttttttgggaatgtggaccttacatcg
- - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG