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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCACTATTACAGGTAAAATATATTGATAGTTATTCTGTTACCGTCCAAGAGTTAGAATCTGTAACAGCCAAGTTTAAGTTCAATTCCATGATGCGAGgtaccctccttttattttttcttccttttcactggtgtattgacctcttaatctttaccttgctgctaatgttcgagcctcaggcagtcatcataatgtt...

Basic information

species Glycine max
transcript GLYMA0048S00320.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015381|gb|CX702123.1|CX702123
EST:     GAGTTTAGAATCTGTACCAGCCAAGTTTAAGTTCAATTCCATGATGCGAG                         CACCATTACATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATG
genomic: GAG-TTAGAATCTGTAACAGCCAAGTTTAAGTTCAATTCCATGATGCGAGgtaccctcct ... ttttctccagCACCATTACATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATG
EST: gi|208035428|gb|GD832482.1|GD832482
EST:     AGAGTTAGAATCTGTAACAGCCAAGTTTAAGTTCAATTCCATGATGCGAG                         CACCATTACATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATG
genomic: AGAGTTAGAATCTGTAACAGCCAAGTTTAAGTTCAATTCCATGATGCGAGgtaccctcct ... ttttctccagCACCATTACATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATG
EST: gi|193398322|gb|FK364678.1|FK364678
EST:     TCAATTCCATGATGCGAG                         CACCATTACATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATG
genomic: TCAATTCCATGATGCGAGgtaccctcct ... ttttctccagCACCATTACATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATG
EST: gi|193577963|gb|FK533795.1|FK533795
EST:     AGTTCAATTCCATGATGCGAG                         CACCATTACATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATG
genomic: AGTTCAATTCCATGATGCGAGgtaccctcct ... ttttctccagCACCATTACATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATG
EST: gi|58015722|gb|CX702464.1|CX702464
EST:     CCAAGTTTAAGTTCAATTCCATGATGCGAG                         CACCATTACATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATG
genomic: CCAAGTTTAAGTTCAATTCCATGATGCGAGgtaccctcct ... ttttctccagCACCATTACATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATG
EST: gi|193604571|gb|FK560348.1|FK560348
EST:     AGAGTTAGAATCTGTAACAGCCAAGTTTAAGTTCAATTCCATGATGCGAG                         CACCATTACATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATG
genomic: AGAGTTAGAATCTGTAACAGCCAAGTTTAAGTTCAATTCCATGATGCGAGgtaccctcct ... ttttctccagCACCATTACATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATG