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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttaccttccttcttttcttttttcctttactcaattttcaatctcattttaccattaattaattaatactctctgccctgcagGATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCATCAGAGTTCCATTGCAGGCAAA

Basic information

species Glycine max
transcript GLYMA0048S00320.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0048S00320.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0071g00750.t01 (Vitis vinifera), 3'ss of exon 1
----------gtaact-taccttccttcttttcttttttcctttactcaattttcaatctcattttaccatta-attaattaatactctctgccctgcagGATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCATCAGAGTTCCATTGCAGGCAAA
          ||   | | | |||  |   |  || | |   ||  | ||||| |    |    ||   ||||   |||||  |    |   |  ||||||| |||||||| ||||||||||| | ||  |||||||  |||||||||| ||| ||||| ||||||
agtatttggagtctttatgcattctgtggctaattctatttattgataaatttccctgatgcgcttctgattatgctaattgttctcttgaactatgcagGACCGTGTGCGGACTGAAACATATAAGGCAGCAATCACACAGCATCAGAATTCTATTGCTGGCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208165359|gb|GD960673.1|GD960673
EST:     CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAG                         GATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCATCAGAGT
genomic: CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAGgtaacttacc ... tgccctgcagGATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCATCAGAGT
EST: gi|298196408|gb|HO041151.1|HO041151
EST:     CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAG                         GATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCATCAGAGT
genomic: CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAGgtaacttacc ... tgccctgcagGATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCATCAGAGT
EST: gi|208265462|gb|GE062654.1|GE062654
EST:     CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAG                         GATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCATCAGAGT
genomic: CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAGgtaacttacc ... tgccctgcagGATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCATCAGAGT
EST: gi|193618807|gb|FK568325.1|FK568325
EST:     CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAG                         GATCGTGTGCGTACTGAAACATACAGGGATGCAA
genomic: CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAGgtaacttacc ... tgccctgcagGATCGTGTGCGTACTGAAACATACAGGGATGCAA
EST: gi|207786274|gb|GD758681.1|GD758681
EST:     CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAG                         GATCGTGTGCG
genomic: CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAGgtaacttacc ... tgccctgcagGATCGTGTGCG
EST: gi|193716768|gb|FK649846.1|FK649846
EST:     CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAG                         GATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCATCAGAGT
genomic: CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAGgtaacttacc ... tgccctgcagGATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCATCAGAGT
EST: gi|193588987|gb|FK541813.1|FK541813
EST:     CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAG                         GATCGTGTGCG
genomic: CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAGgtaacttacc ... tgccctgcagGATCGTGTGCG
EST: gi|193677589|gb|FK616191.1|FK616191
EST:     CC-ATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAG                         GATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCATCAGAGT
genomic: CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAGgtaacttacc ... tgccctgcagGATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCATCAGAGT
EST: gi|208065460|gb|GD861255.1|GD861255
EST:     CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAG                         GATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCAT
genomic: CCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAGgtaacttacc ... tgccctgcagGATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcaattttcaatctcattttaccattaattaattaatactctctgccctgcagGATCGTGTGCGTACTGAAACATACAGGGATGCAATCATGCAGCATCAGAGTTCCATTGCAGGCAAA
                                aattaat  putative branch site (score: 3)
                                        ctctctgccct  CT-rich tract
     attttcaatctcattt  TA-rich tract