1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttcaaaattaggtttttaatttacttgttccaaactttaatttttttccatcattatagcatttgacatgtatgatgttgtggaatatttgtcttgccagGTGTATGCTATTGATGCCAGTGACATTGCCCTGCAG
species | Glycine max |
transcript | GLYMA0048S00320.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGGTACGGGAATCCTTTCTATATTTTGTGCTCAGGCTGGTGCAAAACGG GTGTATGCTATTGATGCCAGTGACATTGCCCTGCAGEST: gi|208254803|gb|GE056501.1|GE056501
genomic: GCGGTACGGGAATCCTTTCTATATTTTGTGCTCAGGCTGGTGCAAAACGGgtatgctctt ... gtcttgccagGTGTATGCTATTGATGCCAGTGACATTGCCCTGCAG
EST: GCGGTACGGGAATCCTTTCTATATTTTGTGCTCAGGCTGGTGCAAAACGG GTGTATGCTATTGATGCCAGTGACATTGCCCTGCAGEST: gi|193674616|gb|FK618212.1|FK618212
genomic: GCGGTACGGGAATCCTTTCTATATTTTGTGCTCAGGCTGGTGCAAAACGGgtatgctctt ... gtcttgccagGTGTATGCTATTGATGCCAGTGACATTGCCCTGCAG
EST: GCGGTACGGGAATCCTTTCTATATTTTGTGCTCAGGCTGGTGCAAAACGG GTGTATGCTATTGATGCCAGTGACATTGCCCTGCAG
genomic: GCGGTACGGGAATCCTTTCTATATTTTGTGCTCAGGCTGGTGCAAAACGGgtatgctctt ... gtcttgccagGTGTATGCTATTGATGCCAGTGACATTGCCCTGCAG
ttccatcattatagcatttgacatgtatgatgttgtggaatatttgtcttgccagGTGTATGCTATTGATGCCAGTGACATTGCCCTGCAG
atttgac putative branch site (score: 4)
tttgtctt putative PPT
aatatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaaaattaggtttttaatttacttgttccaaactttaatttttttccatcattatagcatttgacatgtatgatgttgtggaatatttgtcttgccagGTGTATGCTATTGATGCCAGTGACATTGCCCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - -ccaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgtgg