Sequence
atgc intronic sequence ATGC exonic sequenceGATGTTGAAATTGATGAAGAGGTGGATGTTATAATTTCAGAATGGATGGGCTATATGCTTCTATATGAGgtgcttattaggatttttctgattgttcgattaatgtatattttttaatattgaaagctaaaataaaatttcatgagatcatcagagcaaaaccataaat...
Basic information
species | Glycine max |
transcript | GLYMA0048S00320.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA0048S00320.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g58060.2 (Oryza sativa), 5'ss of exon 6
GATGTTGAAATTGATGAAGAGGTGGATGTTATAATTTCAGAATGGATGGGCTATATGCTTCTATATGAGgtgcttattaggatttttctgattgttcgattaatgt---atattttttaatattgaaagctaaaataaaatttcatgagatcatcagagcaaaaccataaat----------
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GATGTTGAAGTTGAGGATAAGGTTGATGTGATAATATCAGAGTGGATGGGTTATATGCTTCTCTATGAGgttcattcttttatatggttgttttttgcgtcacaatttgatattctcttatcttc----cctagttctatctccttctgatttctctagttctgttttcgtctgatctgcag
upper sequence: GLYMA0048S00320.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g34740.1 (Oryza sativa), 5'ss of exon 6
GATGTTGAAATTGATGAAGAGGTGGATGTTATAATTTCAGAATGGATGGGCTATATGCTTCTATATGAGgtgcttattagg---atttttctgattgttcgattaatgtatattttttaatat-tgaaagctaaa-ataaaatttcatgagatcatcagagcaaaaccataaat
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GATGTCGAAATTGAAGAAAAAGTCGATGTCATCATATCTGAATGGATGGGCTACATGCTTCTGTATGAGgtatatataagttccatgtttatgctgctgatcttactccacacatcattttacatgtgtgctatctgtggaatttga--aattagtcatgttgatggtag----
upper sequence: GLYMA0048S00320.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G008287_T02 (Zea mays), 5'ss of exon 6
GATGTTGAAATTGATGAAGAGGTGGATGTTATAATTTCAGAATGGATGGGCTATATGCTTCTATATGAGgtgcttatt---aggatttttctgattgttcgatta-atgtatattttttaatattgaaagctaaaataaaatttcatgagatcatcagagcaaaaccataaat
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GATGTTGACCTTGAGGAAAAGGTTGATGTTATAATATCAGAATGGATGGGCTATATGCTTCTCTATGAGgtttatatttcaatgatgtttcttttcattgcattgcatttcaatgcgctcttacttttatcagtcctaaattcttctgtttttttttcctgtag---------
upper sequence: GLYMA0048S00320.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G20020.2 (Arabidopsis thaliana), 5'ss of exon 5
GATGTTGAAATTGATGAAGAGGTGGATGTTATAATTTCAGAATGGATGGGCTATATGCTTCTATATGAGgtgcttattaggatttttctgattgttcgattaatgtatattttttaatattgaaa-gctaaaataaaatt--tcatgagatcatcagagcaa--aaccataaat---------------------
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GATGTTGAAATCGACGAGGAGGTTGATGTTATAATTTCAGAGTGGATGGGTTACATGCTCTTGTATGAGgttattgtttt-atcttgtatatagataattttatgttaatgtctaaatgataacctaccaaattattattgctccttgatccacctgttctctcattcccgtattatgtttttgatgtgatgtag
upper sequence: GLYMA0048S00320.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0071g00750.t01 (Vitis vinifera), 5'ss of exon 6
GATGTTGAAATTGATGAAGAGGTGGATGTTATAATTTCAGAATGGATGGGCTATATGCTTCTATATGAGgtgcttattaggatttttctgat-tgttcgattaatgtatattttttaa---tattgaaagctaaaataaaatttcatgagatcatcagagcaaaaccataaat-----------------------------------------------------------------------------
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GATGTTGAAATTGATGAAGGGGTTGATGTTATAATTTCAGAGTGGATGGGTTACATGCTGCTGTATGAGgtgatcattgaaaattttgtattatgctgaactattcttgaaactatgaacatgttagaactgcatctggcatgtcttggattta--agcatagtgttatgtttttcacctcctttgtattcgataccttcttttttaagtacctttattttttcgtggatcttgctatctttccttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193614654|gb|FK565198.1|FK565198EST: AGGTGGATGTTATAATTTCAGAATGGATGGGCTATATGCTTCTATATGAG AGCATGCTTGGAAGTGTTATTAATGCTAGAGATCGTTGGCTCAAACCTGGT
genomic: AGGTGGATGTTATAATTTCAGAATGGATGGGCTATATGCTTCTATATGAGgtgcttatta ... tttcttgtagAGCATGCTTGGAAGTGTTATTAATGCTAGAGATCGTTGGCTCAAACCTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GATGTTGAAATTGATGAAGAGGTGGATGTTATAATTTCAGAATGGATGGGCTATATGCTTCTATATGAGgtgcttattaggatttttctgattgttcgattaatgtatattttttaatattgaaagctaaaataaaatttcatgagatcatcagagcaaaaccataaat
- - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataaa