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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTACATGGCTCCTGTCACACATACGGACAGATACAGTGACAGTGTTGACTTCTGGCGCAATGTTTATGGAATTGACAgtgagttctctacttggtaacttagatgacataccagatgttatgaagattgttggaaactgtttatattcttaggaattaatgcctaggatagtggaat...

Basic information

species Glycine max
transcript GLYMA0048S00320.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0048S00320.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G20020.2 (Arabidopsis thaliana), 5'ss of exon 7
TTGTACATGGCTCCTGTCACACATACGGACAGATACAGTGACAGTGTTGACTTCTGGCGCAATGTTTATGGAATTGACAgtgagttctctacttggt--aacttagatgacataccagatgttatgaagattgttggaa-actgtttatattcttaggaattaatgcctaggatagtggaat
|| |||||||| ||| |  | ||  | |||||||||||| ||||| |||| || ||||||||||||||||||||||| ||| |||  | ||     |  |||||   ||  | |     ||   | ||  |  |||| | |||| |   |||   |   | | ||   |     | |   | 
TTATACATGGCACCTATTTCTCACCCTGACAGATACAGTCACAGTATTGATTTTTGGCGCAATGTTTATGGAATTGATAgtaagtattatatcaacttgaactt---tgggacaatcattgcattaaatttgattggtatactggtagaattgaaactgagttatatttcttgcaattttag

upper sequence: GLYMA0048S00320.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv10s0071g00750.t01 (Vitis vinifera), 5'ss of exon 8
TTGTACATGGCTCCTGTCACACATACGGACAGATACAGTGACAGTGTTGACTTCTGGCGCAATGTTTATGGAATTGACAgtgagttctctacttggtaacttagatgaca-taccagatgttatgaagattgt-tggaaactgtttatattcttaggaattaatgcctaggatagtggaat
||||||||||| ||||||||||| || ||||||||||| |||||  |||| |||||||||||||| ||||||||||| ||| ||| | |  | | |||| ||| ||||   || ||  ||  |  | | || | ||  ||   | |  | | | |  |  || ||   |   |  | ||  
TTGTACATGGCACCTGTCACACACACTGACAGATACAGAGACAGCATTGATTTCTGGCGCAATGTATATGGAATTGATAgtaagtacacatcctagtaaattaaatgattctatcatttgaaactatgtttatatgtgaaacatgtggaatatgatcatatagtgttcatatttctaga--