1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACCCTATAGAGCTGGAACAAGATCAACTAATTGAAGGTTCAGTGACATTGTCACAAAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATACgtgagtcagaacaatttctttcaccaaaatatgcctttagggtaatttttaatggatttctgactttgttccctgccattgcag
species | Glycine max |
transcript | GLYMA0048S00320.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TCACAAAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATAC TTCAGGTGGTCGATCGTATGTGAAAGAGTCTGTTATGAGATGATGATCTTTEST: gi|58015722|gb|CX702464.1|CX702464
genomic: TCACAAAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATACgtgagtcaga ... gccattgcagTTCAGGTGGTCGATCGTATGTGAAAGAGTCTGTTATGAGATGATGATCTTT
EST: TCACAAAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATAC TTCAGGTGGTCGATCGTATGTGAAAGAGTCTGTTATGAGATGATGATCTTTEST: gi|207746092|gb|GD717818.1|GD717818
genomic: TCACAAAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATACgtgagtcaga ... gccattgcagTTCAGGTGGTCGATCGTATGTGAAAGAGTCTGTTATGAGATGATGATCTTT
EST: TCACAAAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATAC TTCAGGTGGTCGATCGTATGTGAAAGAGTCTGTTATGAGATGATGATCTTTEST: gi|208168294|gb|GD972624.1|GD972624
genomic: TCACAAAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATACgtgagtcaga ... gccattgcagTTCAGGTGGTCGATCGTATGTGAAAGAGTCTGTTATGAGATGATGATCTTT
EST: CGATTTATGAATATTCACCTTGAATATAC TTCAGGTGGTCGATCGTATGTGAAAGAGTCTGTTATGAGATGATGATCTTT
genomic: CGATTTATGAATATTCACCTTGAATATACgtgagtcaga ... gccattgcagTTCAGGTGGTCGATCGTATGTGAAAGAGTCTGTTATGAGATGATGATCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCCTATAGAGCTGGAACAAGATCAACTAATTGAAGGTTCAGTGACATTGTCACAAAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATACgtgagtcagaacaatttctttcaccaaaatatgcctttagggtaatttttaatggatttctgactttgttccctgccattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA