1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtttttattattatgcttattttgactgctggaatattatgttcaaaattacatttcttttattattttggtgtcttgatcttattgatgtattttgcagACGTTGATATACTTTTATGACCCTATAGAGCTGGAACAAGATCAACTAATTGAAGGTTCAGTGACATTGTCACAAAGCAAAGAAAATGCTCGATTTATGA
species | Glycine max |
transcript | GLYMA0048S00320.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CACTGGTCTTGTCCACTGCGCCTGAGGACCCTCCAACACATTGGCAGCAG ACGTTGATATACTTTTATGACCCTATAGAGCTGGAACAAGATCAACTAATTEST: gi|193398322|gb|FK364678.1|FK364678
genomic: CACTGGTCTTGTCCACTGCGCCTGAGGACCCTCCAACACATTGGCAGCAGgtgcagtatt ... tattttgcagACGTTGATATACTTTTATGACCCTATAGAGCTGGAACAAGATCAACTAATT
EST: CACTGGTCTTGTCCACTGCGCCTGAGGACCCTCCAACACATTGGCAGCAG ACGTTGATATACTTTTATGACCCTAEST: gi|58015722|gb|CX702464.1|CX702464
genomic: CACTGGTCTTGTCCACTGCGCCTGAGGACCCTCCAACACATTGGCAGCAGgtgcagtatt ... tattttgcagACGTTGATATACTTTTATGACCCTA
EST: CACTGGTCTTGTCCACTGCGCCTGAGGACCCTCCAACACATTGGCAGCAG ACGTTGATATACTTTTATGACCCTATAGAGCTGGAACAAGATCAACTAATT
genomic: CACTGGTCTTGTCCACTGCGCCTGAGGACCCTCCAACACATTGGCAGCAGgtgcagtatt ... tattttgcagACGTTGATATACTTTTATGACCCTATAGAGCTGGAACAAGATCAACTAATT
aaattacatttcttttattattttggtgtcttgatcttattgatgtattttgcagACGTTGATATACTTTTATGACCCTATAGAGCTGGAACAAGATCAACTAATTGAAGGTTCAGTGACATTGTCACAAAGCAAAGAAAATGCTCGATTTATGA
tattgat putative branch site (score: 3)
acatttcttttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttattattatgcttattttgactgctggaatattatgttcaaaattacatttcttttattattttggtgtcttgatcttattgatgtattttgcagACGTTGATATACTTTTATGACCCTATAGAGCTGGAACAAGATCAACTAATTGAAGGTTCAGTGACATTGTCACAAAGCAAAGAAAATGCTCGATTTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - -tatgctt
- - - - - - - - - - - - -ctgctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcttg