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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcgtgtggcgccataaagtggttcttaagctgctttcatacctcactgtggtgcatgtgcggtgctgactttatgtgtgctcatgcctttgttgcaatacagAACCAGTTCAAGAGTGCGCGCCGCCTGAACGCCGCCAACGCTGTGGCGGCCGCCCTGACCCTGGCCCGGACCAACCGCACTA

Basic information

species Chlamydomonas reinhardtii
transcript EDP09496
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10784361|gb|AV641033.1|AV641033
EST:     AGATTAAGAACATCCTAATGAGCTCTGGCGATCTGCTGCCCAGTCTGAAC                         AACCAGTTCAAGAGTGCGCGCCGCCTGAACGCCGCCAACGCTGTGGCGGCC
genomic: AGATTAAGAACATCCTAATGAGCTCTGGCGATCTGCTGCCCAGTCTGAACgtgagtttcg ... tgcaatacagAACCAGTTCAAGAGTGCGCGCCGCCTGAACGCCGCCAACGCTGTGGCGGCC
EST: gi|49468810|gb|BP096671.1|BP096671
EST:     AGATTAAGAACATCCTAATGAGCTCTGGCGATCTGCTGCCCAGTCTGAAC                         AACCAGTTCAAGAGTGCGCGCCGCCTGAACGCCGCCCAACGCTGTGGCGGC
genomic: AGATTAAGAACATCCTAATGAGCTCTGGCGATCTGCTGCCCAGTCTGAACgtgagtttcg ... tgcaatacagAACCAGTTCAAGAGTGCGCGCCGCCTGAACGCCGCC-AACGCTGTGGCGGC
EST: gi|6549961|gb|AV395745.1|AV395745
EST:     AGATTAAGAACATCCTAATGAGCTCTGGCGATCTGCTGCCCAGTCTGAAC                         AACCAGTTCAAGAGTGCGCGCCGCCTGAACGCCGCCAACGCTGTGGCGGCC
genomic: AGATTAAGAACATCCTAATGAGCTCTGGCGATCTGCTGCCCAGTCTGAACgtgagtttcg ... tgcaatacagAACCAGTTCAAGAGTGCGCGCCGCCTGAACGCCGCCAACGCTGTGGCGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtgcatgtgcggtgctgactttatgtgtgctcatgcctttgttgcaatacagAACCAGTTCAAGAGTGCGCGCCGCCTGAACGCCGCCAACGCTGTGGCGGCCGCCCTGACCCTGGCCCGGACCAACCGCACTA
               tgctgac  putative branch site (score: 2)
                                      cctttgtt  putative PPT
                    actttat  TA-rich tract