Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATACCAGTACGGCTATTTCCAGGCCAACAAGGACATACGGCGCTATCGTGACTGGCAGACCACTGTGCCTGACTTCAACTTCGCCACCGGTGCCGATgtgagtggcagacaagttgaggcgcagaggccgggagcgaaagcggcctggcgcgcgggggcgggctggacgcggccacaagctgcagctcaagggtgtgttaccgtagtcccgtgcattaaggccatgctccattcgctttttgcttttcccaccttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09496
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10127821|gb|BE726525.1|BE726525
EST:     GTGACTGGCAGACCACTGTGCCTGACTTCAACTTCGCCACCGGTGCCGAT                         CTTCGAAGCGGTCTCTATGGCACCGGCACCGCCATGCTCAACCCCGCCAAC
genomic: GTGACTGGCAGACCACTGTGCCTGACTTCAACTTCGCCACCGGTGCCGATgtgagtggca ... caccttgcagCTTCGAAGCGGTCTCTATGGCACCGGCACCGCCATGCTCAACCCCGCCAAC
EST: gi|22072296|gb|BQ821634.1|BQ821634
EST:     GTGACTGGCAGACCACTGTGCCTGACTTCAACTTCGCCACCGGTGCCGAT                         CTTCGAAGCGGTCTCTATGGCACCGGCACCGCCATGCTCAACCCCGCCAAC
genomic: GTGACTGGCAGACCACTGTGCCTGACTTCAACTTCGCCACCGGTGCCGATgtgagtggca ... caccttgcagCTTCGAAGCGGTCTCTATGGCACCGGCACCGCCATGCTCAACCCCGCCAAC
EST: gi|15369246|gb|BI528672.1|BI528672
EST:     CTGACTTCAACTTCGCCACCGGTGCCGAT                         CTTCGAAGCGGTCTCTATGGCACCGGCACCGCCATGCTCAACCCCGCCAAC
genomic: CTGACTTCAACTTCGCCACCGGTGCCGATgtgagtggca ... caccttgcagCTTCGAAGCGGTCTCTATGGCACCGGCACCGCCATGCTCAACCCCGCCAAC