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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgatgcgacgcaacgcagcaaggcagactgccacggccgtgggcttcttggggtcgtgcagggcattgttgctacgtgctcagtgggcctcatcatgctgccaggtcgtagcccatgcgcatgtaaccctgcgtttgagcccggttgccctgtccccgcgcccttcctgcagCTCAACAACACCGCGCCTGTGGGCATTCAGTGGGCCAACTGCAGCTCGCCCAACCAGCCCGCGGTGCTGTCCACCAACTACGTGTCCTTCTCTTCCGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP09496
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10127821|gb|BE726525.1|BE726525
EST:     CGCTGGCAAGCAACCAGTCGCACGAGATCTACCTCTACTTCGCTGCAATG                         CTCAACAACACCGCGCCTGTGGGCATTCAGT
genomic: CGCTGGCAAGCAACCAGTCGCACGAGATCTACCTCTACTTCGCTGCAATGgtgcgtgatg ... cttcctgcagCTCAACAACACCGCGCCTGTGGGCATTCAGT
EST: gi|16437859|gb|BM003079.1|BM003079
EST:     CGCTGGCAAGCAACCAGTCGCACGAGATCTACCTCTACTTCGCTGCAATG                         CTCAACAACACCGAGCCTGTGGGCATTCAGTGGGCCAACTGCAGCTCGCCC
genomic: CGCTGGCAAGCAACCAGTCGCACGAGATCTACCTCTACTTCGCTGCAATGgtgcgtgatg ... cttcctgcagCTCAACAACACCGCGCCTGTGGGCATTCAGTGGGCCAACTGCAGCTCGCCC
EST: gi|22076267|gb|BQ825043.1|BQ825043
EST:     CGCTGGCAAGCAACCAGTCGCACGAGATCTACCTCTACTTCGCTGCAATG                         CTCAACAACACCGCGCCTGTGGGCATTCAGTGGGCCAACTGCAGCTCGCCC
genomic: CGCTGGCAAGCAACCAGTCGCACGAGATCTACCTCTACTTCGCTGCAATGgtgcgtgatg ... cttcctgcagCTCAACAACACCGCGCCTGTGGGCATTCAGTGGGCCAACTGCAGCTCGCCC
EST: gi|15369246|gb|BI528672.1|BI528672
EST:     CGCTGGCAAGCAACCAGTCGCACGAGATCTACCTCTACTTCGCTGCAATG                         CTCAACAACACCGCGCCTGTGGGCATTCAGTGGGCCAACTGCAGCTCGCCC
genomic: CGCTGGCAAGCAACCAGTCGCACGAGATCTACCTCTACTTCGCTGCAATGgtgcgtgatg ... cttcctgcagCTCAACAACACCGCGCCTGTGGGCATTCAGTGGGCCAACTGCAGCTCGCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcatgtaaccctgcgtttgagcccggttgccctgtccccgcgcccttcctgcagCTCAACAACACCGCGCCTGTGGGCATTCAGTGGGCCAACTGCAGCTCGCCCAACCAGCCCGCGGTGCTGTCCACCAACTACGTGTCCTTCTCTTCCGC
   atgtaac  putative branch site (score: 3)
                              ccctgtccccgcgccc  putative PPT