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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCGCCATGCTCAACCCCGCCAACTATGTGGTGTATGGCTATGCCCGCACCAACCTTGCGCCGAGGGCCTTCAGCCAGGGCGTGGCCTTCCGCCTGCGCgtgagtgcaaaatgtccgcgccgcacacatcttggcctttttaaaagagaaaccgatgtaaaggcgcttgcttgtggccactgttatgcaaagcctctttctgaatacctgtcaatatgtcccacttgtagctgcgcttagcgttcctcgtgcgcgtgtgctgcttctcaaccgaccacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09496
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10127821|gb|BE726525.1|BE726525
EST:     CCAACCTTGCGCCGAGGGCCTTCAGCCAGGGCGTGGCCTTCCGCCTGCGC                         GGCCCGCACACGCGCCTGTTCATCAACGGGCAGTTGGTCTATGACTTCCAG
genomic: CCAACCTTGCGCCGAGGGCCTTCAGCCAGGGCGTGGCCTTCCGCCTGCGCgtgagtgcaa ... ccgaccacagGGCCCGCACACGCGCCTGTTCATCAACGGGCAGTTGGTCTATGACTTCCAG
EST: gi|16437859|gb|BM003079.1|BM003079
EST:     GCCTTCAGCCAGGGCGTGGCCTTCCGCCTGCGC                         GGCCCGCACACGCGCCTGTTCATCAACGGGCAGTTGGTCTATGACTTCCAG
genomic: GCCTTCAGCCAGGGCGTGGCCTTCCGCCTGCGCgtgagtgcaa ... ccgaccacagGGCCCGCACACGCGCCTGTTCATCAACGGGCAGTTGGTCTATGACTTCCAG
EST: gi|22076267|gb|BQ825043.1|BQ825043
EST:     CCAACCTTGCGCCGAGGGCCTTCAGCCAGGGCGTGGCCTTCCGCCTGCGC                         GGCCCGCACACGCGCCTGTTCATCAACGGGCAGTTGGTCTATGACTTCCAG
genomic: CCAACCTTGCGCCGAGGGCCTTCAGCCAGGGCGTGGCCTTCCGCCTGCGCgtgagtgcaa ... ccgaccacagGGCCCGCACACGCGCCTGTTCATCAACGGGCAGTTGGTCTATGACTTCCAG
EST: gi|22072296|gb|BQ821634.1|BQ821634
EST:     CCAACCTTGCGCCGAGGGCCTTCAGCCAGGGCGTGGCCTTCCGCCTGCGC                         GGTCCGCACACGCGCCTGTTCATCAACGGGCAGTTG
genomic: CCAACCTTGCGCCGAGGGCCTTCAGCCAGGGCGTGGCCTTCCGCCTGCGCgtgagtgcaa ... ccgaccacagGGCCCGCACACGCGCCTGTTCATCAACGGGCAGTTG
EST: gi|15369246|gb|BI528672.1|BI528672
EST:     CCAACCTTGCGCCGAGGGCCTTCAGCCAGGGCGTGGCCTTCCGCCTGCGC                         GGCCCGCACACGCGCCTGTTCATCAACGGGCAGTTGGTCTATGACTTCCAG
genomic: CCAACCTTGCGCCGAGGGCCTTCAGCCAGGGCGTGGCCTTCCGCCTGCGCgtgagtgcaa ... ccgaccacagGGCCCGCACACGCGCCTGTTCATCAACGGGCAGTTGGTCTATGACTTCCAG