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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgggctggcggctggctagatgggtgctgcgcgcggaggctgaaatggtcttgaccacagtatctacctgtggcacgctgtgtactcagcgcagatcaataaccgtgtccgctgtggatgccttgcagGCAACGAGTGGACGAGCCTGGAGGGCTGGCGCTCAGGCAACTACACCTACTCGCCCTGCATGATCGCCACCGACAACACGCTCTGCGTGGGCGGCACCAA

Basic information

species Chlamydomonas reinhardtii
transcript EDP09496
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10784361|gb|AV641033.1|AV641033
EST:     GCCCTGTTCGTGGCAGCAGCAG                         GCAACGAGTGGACGAGCCTGGAGGGCTGGCGCTCAGGCAACTACACCTACT
genomic: GCCCTGTTCGTGGCAGCAGCAGgtgggtgggc ... tgccttgcagGCAACGAGTGGACGAGCCTGGAGGGCTGGCGCTCAGGCAACTACACCTACT
EST: gi|10792973|gb|AV630339.1|AV630339
EST:     CCGCAACCTGTTTAACAAGTACTCCAACGCCCTGTTCGTGGCAGCAGCAG                         GCAACGAGTGGACGAGCCTGGAGGGCTGGCGCTCAGGCAACTACACCTACT
genomic: CCGCAACCTGTTTAACAAGTACTCCAACGCCCTGTTCGTGGCAGCAGCAGgtgggtgggc ... tgccttgcagGCAACGAGTGGACGAGCCTGGAGGGCTGGCGCTCAGGCAACTACACCTACT
EST: gi|22068513|gb|BQ818425.1|BQ818425
EST:     CCGCAACCTGTTTAACAAGTACTCCAACGCCCTGTTCGTGGCAGCAGCAG                         GCAACGAGTGGACGAGCCTGGAGGGCTGGCGCTCAGGCAACTACACCTACT
genomic: CCGCAACCTGTTTAACAAGTACTCCAACGCCCTGTTCGTGGCAGCAGCAGgtgggtgggc ... tgccttgcagGCAACGAGTGGACGAGCCTGGAGGGCTGGCGCTCAGGCAACTACACCTACT
EST: gi|10786168|gb|AV642840.1|AV642840
EST:     CCGCAACCTGTTTAACAAGTACTCCAACGCCCTGTTCGTGGCAGCAGCAG                         GCAACGAGTGGACGAGCCTGGAGGGCTGGCGCTCAGGCAACTACACCTACT
genomic: CCGCAACCTGTTTAACAAGTACTCCAACGCCCTGTTCGTGGCAGCAGCAGgtgggtgggc ... tgccttgcagGCAACGAGTGGACGAGCCTGGAGGGCTGGCGCTCAGGCAACTACACCTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacgctgtgtactcagcgcagatcaataaccgtgtccgctgtggatgccttgcagGCAACGAGTGGACGAGCCTGGAGGGCTGGCGCTCAGGCAACTACACCTACTCGCCCTGCATGATCGCCACCGACAACACGCTCTGCGTGGGCGGCACCAA
                       caataac  putative branch site (score: 2)
                     atcaataa  TA-rich tract