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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacccgcaagttctggtgactcatctaagcgagtgcaggcacacagccaccgcatcttctgtgtaacgccgtattcaatgcgtcgccaacacgcacgttcctcactttcccttgcgcccaatggcctaccatcgctgaccccatccccacccaatcccgccgcaccccttccggctcgcagTCTGGCCACCAAGTTCTTCTACAGCCCCAACCCTAACACCGTGGCCTCCCTGCCTCGCGGCTTCCGCTGCGACGCCTGGGCCGCCAACGGCTCCATCACC

Basic information

species Chlamydomonas reinhardtii
transcript EDP09496
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10128132|gb|BE726836.1|BE726836
EST:     CCCAACCAGCCCGCGGTGCTGTCCACCAACTACGTGTCCTTCTCTTCCGC                         TCTGGCCACCAAGTTCTTCTACAGCCCCAACCCTAACACCGTGGCCTCCCT
genomic: CCCAACCAGCCCGCGGTGCTGTCCACCAACTACGTGTCCTTCTCTTCCGCgtgagtaccc ... cggctcgcagTCTGGCCACCAAGTTCTTCTACAGCCCCAACCCTAACACCGTGGCCTCCCT
EST: gi|16437859|gb|BM003079.1|BM003079
EST:     CCCAACCAGCCAGCGGTGCTGTCCACCAACTACGTGTCCTTCTCTTCCGC                         TCTGGCCACCAAGTTCTTCTACAGCCCCAACCCTAACACCGTGGCCTCCCT
genomic: CCCAACCAGCCCGCGGTGCTGTCCACCAACTACGTGTCCTTCTCTTCCGCgtgagtaccc ... cggctcgcagTCTGGCCACCAAGTTCTTCTACAGCCCCAACCCTAACACCGTGGCCTCCCT
EST: gi|22076267|gb|BQ825043.1|BQ825043
EST:     CCCAACCAGCCCGCGGTGCTGTCCACCAACTACGTGTCCTTCTCTTCCGC                         TCTGGCCACCAAGTTCTTATACAGCCCCAACCCTA
genomic: CCCAACCAGCCCGCGGTGCTGTCCACCAACTACGTGTCCTTCTCTTCCGCgtgagtaccc ... cggctcgcagTCTGGCCACCAAGTTCTTCTACAGCCCCAACCCTA
EST: gi|10782382|gb|AV639062.1|AV639062
EST:     CCCAACCAGCCCGCGGTGCTGTCCACCAACTACGTGTCCTTCTCTTCCGC                         TCTGGCCACCAAGTTCTTCTACAGCCCCAACCCTAACACCGTGGCCTCCCT
genomic: CCCAACCAGCCCGCGGTGCTGTCCACCAACTACGTGTCCTTCTCTTCCGCgtgagtaccc ... cggctcgcagTCTGGCCACCAAGTTCTTCTACAGCCCCAACCCTAACACCGTGGCCTCCCT
EST: gi|15369246|gb|BI528672.1|BI528672
EST:     CCCAACCAGCCCGCGGTGCTGTCCACCAACTACGTGTCCTTCTCTTCCGC                         TCTGGCCACCAAGTTCTTCTACAGCCCCAACCCTAACACCGTGGCCTCCCT
genomic: CCCAACCAGCCCGCGGTGCTGTCCACCAACTACGTGTCCTTCTCTTCCGCgtgagtaccc ... cggctcgcagTCTGGCCACCAAGTTCTTCTACAGCCCCAACCCTAACACCGTGGCCTCCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccatcgctgaccccatccccacccaatcccgccgcaccccttccggctcgcagTCTGGCCACCAAGTTCTTCTACAGCCCCAACCCTAACACCGTGGCCTCCCTGCCTCGCGGCTTCCGCTGCGACGCCTGGGCCGCCAACGGCTCCATCACC
      cgctgac  putative branch site (score: 3)
                                    caccccttcc  putative PPT