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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccggcacgggtttgaagacatgggtgtgctgttactcaagacgctgggaaaggtcgggccataatggcctagaatgcggccaccgtgtcctcaacaacgctcatcaaccaaccgtttgccgccttgcagCCCACCAACAAGCCTAGTCTGGACGCGGCTGCCACTGCCTACCGCAACCTGTTTAACAAGTACTCCAACGCCCTGTTCGTGGCAGCAGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09496
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10792973|gb|AV630339.1|AV630339
EST:     CGCGCATCTTCTCCATGTCGTTTGGCCAGGACGCCCGCACCAGTGCCACG                         CCCACCAACAAGCCTAGTCTGGACGCGGCTGCCACTGCCTACCGCAACCTG
genomic: CGCGCATCTTCTCCATGTCGTTTGGCCAGGACGCCCGCACCAGTGCCACGgtaagccggc ... cgccttgcagCCCACCAACAAGCCTAGTCTGGACGCGGCTGCCACTGCCTACCGCAACCTG
EST: gi|22068513|gb|BQ818425.1|BQ818425
EST:     CGCGCATCTTCTCCATGTCGTTTGGCCAGGACGCCCGCACCAGTGCCACG                         CCCACCAACAAGCCTAGTCTGGACGCGGCTGCCACTGCCTACCGCAACCTG
genomic: CGCGCATCTTCTCCATGTCGTTTGGCCAGGACGCCCGCACCAGTGCCACGgtaagccggc ... cgccttgcagCCCACCAACAAGCCTAGTCTGGACGCGGCTGCCACTGCCTACCGCAACCTG
EST: gi|10786168|gb|AV642840.1|AV642840
EST:     CGCGCATCTTCTCCATGTCGTTTGGCCAGGACGCCCGCACCAGTGCCACG                         CCCACCAACAAGCCTAGTCTGGACGCGGCTGCCACTGCCTACCGCAACCTG
genomic: CGCGCATCTTCTCCATGTCGTTTGGCCAGGACGCCCGCACCAGTGCCACGgtaagccggc ... cgccttgcagCCCACCAACAAGCCTAGTCTGGACGCGGCTGCCACTGCCTACCGCAACCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcggccaccgtgtcctcaacaacgctcatcaaccaaccgtttgccgccttgcagCCCACCAACAAGCCTAGTCTGGACGCGGCTGCCACTGCCTACCGCAACCTGTTTAACAAGTACTCCAACGCCCTGTTCGTGGCAGCAGCAG
                                            ccgcctt  CT-rich tract