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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagcacggggtagtggacgggttgagtatcttgtacccgttacggatatccaggcaagggttcgggcttagcaaacgatgttgcatttcattattggcccaactcaccgcttaccccctaaccccctaccctgtacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06428
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10768289|gb|AV619114.1|AV619114
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|8287449|gb|BE025008.1|BE025008
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGA
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGA
EST: gi|6545885|gb|AV391669.1|AV391669
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|10776651|gb|AV633331.1|AV633331
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|6543557|gb|AV389341.1|AV389341
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|22064679|gb|BQ815960.1|BQ815960
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|15372787|gb|BI532213.1|BI532213
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|10769430|gb|AV620255.1|AV620255
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|15695889|gb|BI720194.1|BI720194
EST:     GTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: GTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|161799550|gb|FC087242.1|FC087242
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|10771937|gb|AV622760.1|AV622760
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|6546668|gb|AV392452.1|AV392452
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|10772480|gb|AV623303.1|AV623303
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|10770932|gb|AV621755.1|AV621755
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|6542619|gb|AV388403.1|AV388403
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|16071655|gb|BI873651.1|BI873651
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|10776180|gb|AV632860.1|AV632860
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|15370059|gb|BI529485.1|BI529485
EST:     GTGTACGTCGCCGTCATGATGGCCTCCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCTCCTTCAGCGAGATCTGCAACGAGTCCAT
genomic: GTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACC-CCTTCAGCGAGATCTGCAACGAGTCCAT
EST: gi|15695715|gb|BI720020.1|BI720020
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|6550089|gb|AV395873.1|AV395873
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|6541132|gb|AV386916.1|AV386916
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|15702302|gb|BI726607.1|BI726607
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|10783004|gb|AV639676.1|AV639676
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|161813009|gb|FC094834.1|FC094834
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|49463395|gb|BP091308.1|BP091308
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCAACCCTTCAG
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAG
EST: gi|15370924|gb|BI530350.1|BI530350
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|22076389|gb|BQ825165.1|BQ825165
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|161820670|gb|FC106157.1|FC106157
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|10771022|gb|AV621845.1|AV621845
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
EST: gi|49463359|gb|BP091272.1|BP091272
EST:     ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAG                         GTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC
genomic: ACCCCTTCACCGCCGGTGTGTACGTCGCCGTCATGATGGCCACCGTCGAGgtgagcgagc ... ccctgtacagGTGCTGCGCGAGAAGGGCCACCCCTTCAGCGAGATCTGCAACGAGTCCATC