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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggcaggcgggttatcgttgagcgagcgcgggcgagcgcgggggttggcgtgcaagtcgtcgcggggttggtccgtgccgcacccctaccccagtgacattccgcttcgaggcctggctcgtgcacctatgcttgttgccacccccatatcctctttattttcgcagGGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAACGGCGCGGGCATCAACTGCTCGTTCGCCATCCAGCAGGACGCCACTGGCC

Basic information

species Chlamydomonas reinhardtii
transcript EDP06428
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10783849|gb|AV640521.1|AV640521
EST:     ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAG                         GGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAAC
genomic: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAGgtgggcaggc ... attttcgcagGGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAAC
EST: gi|49465577|gb|BP093490.1|BP093490
EST:     ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAG                         GGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAAC
genomic: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAGgtgggcaggc ... attttcgcagGGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAAC
EST: gi|10789052|gb|AV626772.1|AV626772
EST:     ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAG                         GGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAAC
genomic: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAGgtgggcaggc ... attttcgcagGGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAAC
EST: gi|49469826|gb|BP097687.1|BP097687
EST:     ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAG                         GGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAAC
genomic: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAGgtgggcaggc ... attttcgcagGGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAAC
EST: gi|8286860|gb|BE024419.1|BE024419
EST:     ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAG                         GGTATGGGCCCGTCGGTGCGCCG
genomic: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAGgtgggcaggc ... attttcgcagGGTATGGGCCCGTCGGTGCGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctggctcgtgcacctatgcttgttgccacccccatatcctctttattttcgcagGGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAACGGCGCGGGCATCAACTGCTCGTTCGCCATCCAGCAGGACGCCACTGGCC
                             cccccatatcctcttt  CT-rich tract
                                        tctttatttt  TA-rich tract