1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCCACTCTGGGTCTGAGCCATGGCTTCCTGCTGGGCGTCATGCGCAACGACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAGgtgggcaggcgggttatcgttgagcgagcgcgggcgagcgcgggggttggcgtgcaagtcgtcgcggggttggtccgtgccgcacccctaccccagtgacattccgcttcgaggcctggctcgtgcacctatgcttgttgccacccccatatcctctttattttcgcag
species | Chlamydomonas reinhardtii |
transcript | EDP06428 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAG GGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAACEST: gi|49465577|gb|BP093490.1|BP093490
genomic: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAGgtgggcaggc ... attttcgcagGGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAAC
EST: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAG GGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAACEST: gi|10789052|gb|AV626772.1|AV626772
genomic: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAGgtgggcaggc ... attttcgcagGGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAAC
EST: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAG GGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAACEST: gi|49469826|gb|BP097687.1|BP097687
genomic: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAGgtgggcaggc ... attttcgcagGGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAAC
EST: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAG GGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAACEST: gi|8286860|gb|BE024419.1|BE024419
genomic: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAGgtgggcaggc ... attttcgcagGGTATGGGCCCGTCGGTGCGCCGCCTCTATGAGCAGGGCAAGTCCGTCAAC
EST: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAG GGTATGGGCCCGTCGGTGCGCCG
genomic: ACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAGgtgggcaggc ... attttcgcagGGTATGGGCCCGTCGGTGCGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCACTCTGGGTCTGAGCCATGGCTTCCTGCTGGGCGTCATGCGCAACGACGGTGTGGACTTCCGCAAGGACATCAATGTCGTGCTGGTGGCCCCCAAGgtgggcaggcgggttatcgttgagcgagcgcgggcgagcgcgggggttggcgtgcaagtcgtcgcggggttggtccgtgccgcacccctaccccagtgacattccgcttcgaggcctggctcgtgcacctatgcttgttgccacccccatatcctctttattttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG