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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTGCGGGTTCAGCAAGACGGACGGTACTCTGGGCGAGGTCTTCGAGCAGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggctttaagggagggcctggatcgagcgtgggagtgatttagccgccgcgagcatgtccttcgtcctcgtcgctcggatttccctgctcaccaacgaattttgtatttgacgtgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06428
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10783849|gb|AV640521.1|AV640521
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|6551022|gb|AV396806.1|AV396806
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGNCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|6551497|gb|AV397281.1|AV397281
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGNCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|49465577|gb|BP093490.1|BP093490
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|10789052|gb|AV626772.1|AV626772
EST:     ATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: ATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|49465748|gb|BP093661.1|BP093661
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|10793149|gb|AV630515.1|AV630515
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAN                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCAT
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCAT
EST: gi|6551342|gb|AV397126.1|AV397126
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGNCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|10778249|gb|AV634929.1|AV634929
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGC
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGC
EST: gi|10785092|gb|AV641764.1|AV641764
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|22068144|gb|BQ818086.1|BQ818086
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|8286860|gb|BE024419.1|BE024419
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|10784371|gb|AV641043.1|AV641043
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|6540771|gb|AV386555.1|AV386555
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCT
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCT
EST: gi|6548572|gb|AV394356.1|AV394356
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTTGCGGGTTCAGCAAGACGGACGGTACTCTGGGCGAGGTCTTCGAGCAGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggctttaagggagggcctggatcgagcgtgggagtgatttagccgccgcgagcatgtccttcgtcctcgtcgctcggatttccctgctcaccaacgaattttgtatttgacgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT