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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattggctttaagggagggcctggatcgagcgtgggagtgatttagccgccgcgagcatgtccttcgtcctcgtcgctcggatttccctgctcaccaacgaattttgtatttgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTGGGTCTGAGCCATGGCTTCCTGCTGGGCGTCATGCGCAACGACGGTGTGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06428
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10783849|gb|AV640521.1|AV640521
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|6551022|gb|AV396806.1|AV396806
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGNCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|6551497|gb|AV397281.1|AV397281
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGNCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|49465577|gb|BP093490.1|BP093490
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|10789052|gb|AV626772.1|AV626772
EST:     ATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: ATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|49465748|gb|BP093661.1|BP093661
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|10793149|gb|AV630515.1|AV630515
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAN                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCAT
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCAT
EST: gi|6551342|gb|AV397126.1|AV397126
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGNCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|10778249|gb|AV634929.1|AV634929
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGC
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGC
EST: gi|10785092|gb|AV641764.1|AV641764
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|22068144|gb|BQ818086.1|BQ818086
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|8286860|gb|BE024419.1|BE024419
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|10784371|gb|AV641043.1|AV641043
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
EST: gi|6540771|gb|AV386555.1|AV386555
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCT
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCT
EST: gi|6548572|gb|AV394356.1|AV394356
EST:     AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAG                         GCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG
genomic: AGATTTCCTCTTCGGACTTCGTTATTCTGCTGATCTCTGATGCTGCTCAGgtaattggct ... tgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcctcgtcgctcggatttccctgctcaccaacgaattttgtatttgacgtgcagGCCAAGCTGTACCCCCGCATCCTGGCTGCCATGAAGCCCGGTGCCACTCTGGGTCTGAGCCATGGCTTCCTGCTGGGCGTCATGCGCAACGACGGTGTGG
                                  aattttgtatttga  TA-rich tract