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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGTGGCCAGCGGCAACGAGATCAAGTCGGTGGTGCAGGCCGTGCAGCGCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaaaatgggcagaattggggtcggtggcgggaaagctcggggcgctgcgttggtggtgcacagcgcagagccagcgaggacgggcaaagaagcggcggggtgcgccaacagttcttgtgcgattctgtcacgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06428
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10768289|gb|AV619114.1|AV619114
EST:     GTTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|8287449|gb|BE025008.1|BE025008
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|6545885|gb|AV391669.1|AV391669
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|10772882|gb|AV623705.1|AV623705
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|10776651|gb|AV633331.1|AV633331
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|22064679|gb|BQ815960.1|BQ815960
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|15372787|gb|BI532213.1|BI532213
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|10769430|gb|AV620255.1|AV620255
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|161799550|gb|FC087242.1|FC087242
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|10771937|gb|AV622760.1|AV622760
EST:     CCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: CCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|6546668|gb|AV392452.1|AV392452
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|10788599|gb|AV626319.1|AV626319
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACG
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACG
EST: gi|10770932|gb|AV621755.1|AV621755
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|6542619|gb|AV388403.1|AV388403
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|16071655|gb|BI873651.1|BI873651
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|10776180|gb|AV632860.1|AV632860
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|15695715|gb|BI720020.1|BI720020
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|6541132|gb|AV386916.1|AV386916
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|15702302|gb|BI726607.1|BI726607
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|10783004|gb|AV639676.1|AV639676
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|10777725|gb|AV634405.1|AV634405
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|161813009|gb|FC094834.1|FC094834
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|49463395|gb|BP091308.1|BP091308
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGACAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|15370924|gb|BI530350.1|BI530350
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|22076389|gb|BQ825165.1|BQ825165
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCCGTCAA
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGAT-CCCCGTCAA
EST: gi|16073375|gb|BI875371.1|BI875371
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCC
EST: gi|161820670|gb|FC106157.1|FC106157
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
EST: gi|49463359|gb|BP091272.1|BP091272
EST:     GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAG                         GTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC
genomic: GCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaa ... tgtcacgcagGTCGGCCAGAAGGTGCGCGCCGAGCGTGACGAGTCCAAGATCCCCGTCAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACGTGGCCAGCGGCAACGAGATCAAGTCGGTGGTGCAGGCCGTGCAGCGCTTCGACCGCTTCCCCATGGGCAAGATCGACCAGACCTACATGTGGAAGgtgcgctcaaaatgggcagaattggggtcggtggcgggaaagctcggggcgctgcgttggtggtgcacagcgcagagccagcgaggacgggcaaagaagcggcggggtgcgccaacagttcttgtgcgattctgtcacgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG