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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATCAACTGCTCGTTCGCCATCCAGCAGGACGCCACTGGCCAGGCCGCGGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttggctgctgcttgcaggggcaggagtccccatttgggttgttccggggcgtcgggtgcgttgcggccagcacgggcgtcaggggcgcggcctaggcgagtgtagagctccccaacccatatcgcacccgcgctgcatttccctcacacgctgcatccgcaccccccacacacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06428
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22071957|gb|BQ821295.1|BQ821295
EST:     GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC                         CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: gi|10788599|gb|AV626319.1|AV626319
EST:     GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC                         CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: gi|10789052|gb|AV626772.1|AV626772
EST:     GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC                         CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: gi|23359661|gb|BU647481.1|BU647481
EST:     GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC                         CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: gi|49469826|gb|BP097687.1|BP097687
EST:     GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC                         CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: gi|15695715|gb|BI720020.1|BI720020
EST:     GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC                         CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: gi|15702302|gb|BI726607.1|BI726607
EST:     GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC                         CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: gi|10777725|gb|AV634405.1|AV634405
EST:     GCTCCCTTCGCCTTCC                         CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
genomic: GCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: gi|161813009|gb|FC094834.1|FC094834
EST:     GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC                         CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: gi|16073375|gb|BI875371.1|BI875371
EST:     GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC                         CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG