1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtttggctgctgcttgcaggggcaggagtccccatttgggttgttccggggcgtcgggtgcgttgcggccagcacgggcgtcaggggcgcggcctaggcgagtgtagagctccccaacccatatcgcacccgcgctgcatttccctcacacgctgcatccgcaccccccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCGTGCTGCTGGGCGCCGTGCACGGCATTGTGGAGGCGCTGTTCCGCCGCTA
species | Chlamydomonas reinhardtii |
transcript | EDP06428 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCGEST: gi|10788599|gb|AV626319.1|AV626319
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCGEST: gi|10789052|gb|AV626772.1|AV626772
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCGEST: gi|23359661|gb|BU647481.1|BU647481
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCGEST: gi|49469826|gb|BP097687.1|BP097687
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCGEST: gi|15695715|gb|BI720020.1|BI720020
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCGEST: gi|15702302|gb|BI726607.1|BI726607
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCGEST: gi|10777725|gb|AV634405.1|AV634405
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: GCTCCCTTCGCCTTCC CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCGEST: gi|161813009|gb|FC094834.1|FC094834
genomic: GCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCGEST: gi|16073375|gb|BI875371.1|BI875371
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
EST: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCC CCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
genomic: GGATATCGCTATCGGCTGGGCCATCGGTGTGGGCGCTCCCTTCGCCTTCCgtgagtttgg ... ccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCG
atcgcacccgcgctgcatttccctcacacgctgcatccgcaccccccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCGTGCTGCTGGGCGCCGTGCACGGCATTGTGGAGGCGCTGTTCCGCCGCTA
ccctcac putative branch site (score: 3)
cacccccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttggctgctgcttgcaggggcaggagtccccatttgggttgttccggggcgtcgggtgcgttgcggccagcacgggcgtcaggggcgcggcctaggcgagtgtagagctccccaacccatatcgcacccgcgctgcatttccctcacacgctgcatccgcaccccccacacacagCCACCACCCTGGAGTCTGAGTACAAGTCGGACATCTACGGCGAGCGCTGCGTGCTGCTGGGCGCCGTGCACGGCATTGTGGAGGCGCTGTTCCGCCGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT