1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tccacatgcccctcctcctgcgctccctgcccgggtgcctggctacaactccgctttttcttgattcgtcatgattgtaacccccgccccccccccccagATCTGCGACGGCGTGCTGATGGACTTCGACGCGCTCAAGGAGGCGCAGTCGGGCCTGGGCACCGCCGCCGTCATCGTCATGGACAAGTCCACC
species | Chlamydomonas reinhardtii |
transcript | EDP06369 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGCTGGCCATCATCCCCGGAGGCAGCTCCGTGCCGCTGCTGCCCAAGAAG ATCTGCGACGGCGTGCTGATGGACTTCGACGCGCTCAAGGAGGCGCAGTCGEST: gi|16072662|gb|BI874658.1|BI874658
genomic: TGCTGGCCATCATCCCCGGAGGCAGCTCCGTGCCGCTGCTGCCCAAGAAGgtgaggaggc ... ccccccccagATCTGCGACGGCGTGCTGATGGACTTCGACGCGCTCAAGGAGGCGCAGTCG
EST: TGCTGGCCATCATCCCCGGAGGCAGCTCCGTGCCGCTGCTGCCCAAGAAG ATCTGCGACGGCGTGCTGATGGACTTCGACGCGCTCAAGGAGGCGCAGTCGEST: gi|23365773|gb|BU653593.1|BU653593
genomic: TGCTGGCCATCATCCCCGGAGGCAGCTCCGTGCCGCTGCTGCCCAAGAAGgtgaggaggc ... ccccccccagATCTGCGACGGCGTGCTGATGGACTTCGACGCGCTCAAGGAGGCGCAGTCG
EST: TGCTGGCCATCATCCCCGGAGGCAGCTCCGTGCCGCTGCTGCCCAAGAAG ATCTGCGACGGCGTGCTGATGGACTTCGACGCGCTCAAGGAGGCGCAGTCGEST: gi|161802052|gb|FC090771.1|FC090771
genomic: TGCTGGCCATCATCCCCGGAGGCAGCTCCGTGCCGCTGCTGCCCAAGAAGgtgaggaggc ... ccccccccagATCTGCGACGGCGTGCTGATGGACTTCGACGCGCTCAAGGAGGCGCAGTCG
EST: TGCTGGCCATCATCCCCGGAGGCAGCTCCGTGCCGCTGCTGCCCAAGAAG ATCTGCGACGGCGTGCTGATGGACTTTGACGCGCTCAAGGAGGCGCAGTCG
genomic: TGCTGGCCATCATCCCCGGAGGCAGCTCCGTGCCGCTGCTGCCCAAGAAGgtgaggaggc ... ccccccccagATCTGCGACGGCGTGCTGATGGACTTCGACGCGCTCAAGGAGGCGCAGTCG
caactccgctttttcttgattcgtcatgattgtaacccccgccccccccccccagATCTGCGACGGCGTGCTGATGGACTTCGACGCGCTCAAGGAGGCGCAGTCGGGCCTGGGCACCGCCGCCGTCATCGTCATGGACAAGTCCACC
ttgtaac putative branch site (score: 2)
taacccccgccccccc CT-rich tract
tttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccacatgcccctcctcctgcgctccctgcccgggtgcctggctacaactccgctttttcttgattcgtcatgattgtaacccccgccccccccccccagATCTGCGACGGCGTGCTGATGGACTTCGACGCGCTCAAGGAGGCGCAGTCGGGCCTGGGCACCGCCGCCGTCATCGTCATGGACAAGTCCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- -acatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaccccc