1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tccctaatggtgcacatgcatgcgccctgaatgctgtttgctctttccaccacctgagtatgtgtacatgcgtcgtgcaccctggtgtgcgtgtctccagGGTGACGCCCGCCTGGAGGAGATCGACATGCTGTGGGAGATCACCAAGCAGATCGAGGGACACACCATCTGCGCGCTGGGCGACGCCGCGGCGTGGCCCG
species | Chlamydomonas reinhardtii |
transcript | EDP06369 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCCGCGAGGGCACCGGCTGGCTGTACGACATCATGACGCGCATGAAGAAG GGTGACGCCCGCCTGGAGGAGATCGACATGCTGTGGGAGATCACCAAGCAGEST: gi|23365773|gb|BU653593.1|BU653593
genomic: GCCGCGAGGGCACCGGCTGGCTGTACGACATCATGACGCGCATGAAGAAGgtgggagcgg ... gtgtctccagGGTGACGCCCGCCTGGAGGAGATCGACATGCTGTGGGAGATCACCAAGCAG
EST: GCCGCGAGGGCACCGGCTGGCTGTACGACATCATGACGCGCATGAAGAAA GGTGACGCCCGCCTGGAGGAGATCGACATGCTGTGGGAGATCACCAAGCAGEST: gi|161802052|gb|FC090771.1|FC090771
genomic: GCCGCGAGGGCACCGGCTGGCTGTACGACATCATGACGCGCATGAAGAAGgtgggagcgg ... gtgtctccagGGTGACGCCCGCCTGGAGGAGATCGACATGCTGTGGGAGATCACCAAGCAG
EST: GCCGCGAGGGCACCGGCTGGCTGTACGACATCATGACGCGCATGAAGAAG GGTGACGCCCGCCTGGAGGAGATCGACATGCTGTGGGAGATCACCAAGCAG
genomic: GCCGCGAGGGCACCGGCTGGCTGTACGACATCATGACGCGCATGAAGAAGgtgggagcgg ... gtgtctccagGGTGACGCCCGCCTGGAGGAGATCGACATGCTGTGGGAGATCACCAAGCAG
tccaccacctgagtatgtgtacatgcgtcgtgcaccctggtgtgcgtgtctccagGGTGACGCCCGCCTGGAGGAGATCGACATGCTGTGGGAGATCACCAAGCAGATCGAGGGACACACCATCTGCGCGCTGGGCGACGCCGCGGCGTGGCCCG
tgtctcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccctaatggtgcacatgcatgcgccctgaatgctgtttgctctttccaccacctgagtatgtgtacatgcgtcgtgcaccctggtgtgcgtgtctccagGGTGACGCCCGCCTGGAGGAGATCGACATGCTGTGGGAGATCACCAAGCAGATCGAGGGACACACCATCTGCGCGCTGGGCGACGCCGCGGCGTGGCCCG
- - - - - - -acatgca
- - - - - - - - - - - - - ctgaatg
- - - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtg