1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttgtttgtggtgacagggcgtgcagtgcagtttgttgctgccgcacctcgaacctgactgtccgcccgccgcatacacgcacacacgcacacggccgcagGACGTGATCGACGCCATCGCGCGCCTGTCCTACTTCTACAAGCACGAGTCGTGCGGCCAGTGCACGCCCTGCCGCGAGGGCACCGGCTGGCTGTACGACA
species | Chlamydomonas reinhardtii |
transcript | EDP06369 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CGCAGTCGGGCCTGGGCACCGCCGCCGTCATCGTCATGGACAAGTCCACC GACGTGATCGACGCCATCGCGCGCCTGTCCTACTTCTACAAGCACGAGTCGEST: gi|16072662|gb|BI874658.1|BI874658
genomic: CGCAGTCGGGCCTGGGCACCGCCGCCGTCATCGTCATGGACAAGTCCACCgtgagtgccg ... acggccgcagGACGTGATCGACGCCATCGCGCGCCTGTCCTACTTCTACAAGCACGAGTCG
EST: CGCAGTCGGGCCTGGGCACCGCCGCCGTCATCGTCATGGACAAGTCCACC GACGTGATCGACGCCATCEST: gi|23365773|gb|BU653593.1|BU653593
genomic: CGCAGTCGGGCCTGGGCACCGCCGCCGTCATCGTCATGGACAAGTCCACCgtgagtgccg ... acggccgcagGACGTGATCGACGCCATC
EST: CGCAGTCGGGCCTGGGCACCGCCGCCGTCATCGTCATGGACAAGTCCACC GACGTGATCGACGCCATCGCGCGCCTGTCCTACTTCTACAAGCACGAGTCGEST: gi|161802052|gb|FC090771.1|FC090771
genomic: CGCAGTCGGGCCTGGGCACCGCCGCCGTCATCGTCATGGACAAGTCCACCgtgagtgccg ... acggccgcagGACGTGATCGACGCCATCGCGCGCCTGTCCTACTTCTACAAGCACGAGTCG
EST: CGCAGTCGGGCCTGGGCACCGCCGCCGTCATCGTCATGGACAAGTCCACC GACGTGATCGACGCCATCGCGCGCCTGTCCTACTTCTACAAGCACGAGTCG
genomic: CGCAGTCGGGCCTGGGCACCGCCGCCGTCATCGTCATGGACAAGTCCACCgtgagtgccg ... acggccgcagGACGTGATCGACGCCATCGCGCGCCTGTCCTACTTCTACAAGCACGAGTCG
cctcgaacctgactgtccgcccgccgcatacacgcacacacgcacacggccgcagGACGTGATCGACGCCATCGCGCGCCTGTCCTACTTCTACAAGCACGAGTCGTGCGGCCAGTGCACGCCCTGCCGCGAGGGCACCGGCTGGCTGTACGACA
acctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttgtggtgacagggcgtgcagtgcagtttgttgctgccgcacctcgaacctgactgtccgcccgccgcatacacgcacacacgcacacggccgcagGACGTGATCGACGCCATCGCGCGCCTGTCCTACTTCTACAAGCACGAGTCGTGCGGCCAGTGCACGCCCTGCCGCGAGGGCACCGGCTGGCTGTACGACA
-tgtttgt
- - - - - - - - - - - - - - - tttgttg
- - - - - - - - - - - - - - - - - - - - - - - ctcgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacacg