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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgccctaacttcacacgtgtggtctcctgcgcactcgctctcaccgcgcgtgtttgtctccgtgtgctcactgctatgtctccctgctcccccattcagGGCCTGATCCGCCACTTCCGTGGCGAGATGGAGGAGCGCATCAAGAGCGCCGGCGGCAAGAAGAAGCTTGCCGCGACCGCGTAAAGCCGCGCAGTTCTGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP06369
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23361304|gb|BU649124.1|BU649124
EST:     AGGGACACACCATCTGCGCGCTGGGCGACGCCGCGGCGTGGCCCGTGCAG                         GGCCTGATCCGCCACTTCCGTGGCGAGATGGAGGAGCGCATCAAGAGCGCC
genomic: AGGGACACACCATCTGCGCGCTGGGCGACGCCGCGGCGTGGCCCGTGCAGgtgcggctgc ... ccccattcagGGCCTGATCCGCCACTTCCGTGGCGAGATGGAGGAGCGCATCAAGAGCGCC
EST: gi|239842179|gb|GR284036.1|GR284036
EST:     AGGGACACACCATCTGCGCGCTGGGCGACGCCGCGGCGTGGCCCGTGCAG                         GGCCTGATCCGCCACTTCCGTGGCGAGATGGAGGAGCGCATCAAGAGCGCC
genomic: AGGGACACACCATCTGCGCGCTGGGCGACGCCGCGGCGTGGCCCGTGCAGgtgcggctgc ... ccccattcagGGCCTGATCCGCCACTTCCGTGGCGAGATGGAGGAGCGCATCAAGAGCGCC
EST: gi|7616209|gb|AW721649.1|AW721649
EST:     GCTGGGCGACGCCGCGGCGTGGCCCGTGCAG                         GGCCTGATCCGCCACTTCCGTGGCGAGATGGAGGAGCGCATCAAGAGCGCC
genomic: GCTGGGCGACGCCGCGGCGTGGCCCGTGCAGgtgcggctgc ... ccccattcagGGCCTGATCCGCCACTTCCGTGGCGAGATGGAGGAGCGCATCAAGAGCGCC
EST: gi|161802052|gb|FC090771.1|FC090771
EST:     AGGGACACACCATCTGCGCGCTGGGCGACGCCGCGGCGTGGCCCGTGCAG                         GGCCTGATCCGCCACTTCCGTGGCGAGATGGAGGAGCGCATCAAGAGCGCC
genomic: AGGGACACACCATCTGCGCGCTGGGCGACGCCGCGGCGTGGCCCGTGCAGgtgcggctgc ... ccccattcagGGCCTGATCCGCCACTTCCGTGGCGAGATGGAGGAGCGCATCAAGAGCGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcgcgtgtttgtctccgtgtgctcactgctatgtctccctgctcccccattcagGGCCTGATCCGCCACTTCCGTGGCGAGATGGAGGAGCGCATCAAGAGCGCCGGCGGCAAGAAGAAGCTTGCCGCGACCGCGTAAAGCCGCGCAGTTCTGC
                    tgctcac  putative branch site (score: 2)
                                tgtctccctgctcccc  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctgccctaacttcacacgtgtggtctcctgcgcactcgctctcaccgcgcgtgtttgtctccgtgtgctcactgctatgtctccctgctcccccattcagGGCCTGATCCGCCACTTCCGTGGCGAGATGGAGGAGCGCATCAAGAGCGCCGGCGGCAAGAAGAAGCTTGCCGCGACCGCGTAAAGCCGCGCAGTTCTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - -tcacacg
- - - - - - - - - - - - - - - - -actcgct
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgtgc