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...gggtgtgtccggtcgcggcattcgcccaacgctctggcgctccttccacccacgcacccacccgcccatgggtggccaccgcctcctctcccgcctgcagGCGGTGTGCGCGGCGGCTGGGACAACCTGCTGGCCATCATCCCCGGAGGCAGCTCCGTGCCGCTGCTGCCCAAGAAG
species | Chlamydomonas reinhardtii |
transcript | EDP06369 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGAGGAGGAGATGTCCATTCCGCTCAAGGAGCTCATCGAGCGCCACGCGG GCGGTGTGCGCGGCGGCTGGGACAACCTGCTGGCCATCATCCCCGGAGGCAEST: gi|16072662|gb|BI874658.1|BI874658
genomic: GGAGGAGGAGATGTCCATTCCGCTCAAGGAGCTCATCGAGCGCCACGCGGgtgagaggag ... ccgcctgcagGCGGTGTGCGCGGCGGCTGGGACAACCTGCTGGCCATCATCCCCGGAGGCA
EST: GGAGGAGGAGATGTCCATTCCGCTCAAGGAGCTCATCGAGCGCCACGCGG GCGGTGTGCGCGGCGGCTGGGACAACCTGCTGGCCATCATCCCCGGAGGCAEST: gi|23365773|gb|BU653593.1|BU653593
genomic: GGAGGAGGAGATGTCCATTCCGCTCAAGGAGCTCATCGAGCGCCACGCGGgtgagaggag ... ccgcctgcagGCGGTGTGCGCGGCGGCTGGGACAACCTGCTGGCCATCATCCCCGGAGGCA
EST: GGAGGAGGAGATGTCCATTCCGCTCAAGGAGCTCATCGAGCGCCACGCGG GCGGTGTGCGCGGCGGCTGGGACAACCTGCTGGCCATCATCCCCGGAGGCAEST: gi|161802052|gb|FC090771.1|FC090771
genomic: GGAGGAGGAGATGTCCATTCCGCTCAAGGAGCTCATCGAGCGCCACGCGGgtgagaggag ... ccgcctgcagGCGGTGTGCGCGGCGGCTGGGACAACCTGCTGGCCATCATCCCCGGAGGCA
EST: GGAGGAGGAGATGTCCATTCCGCTCAAGGAGCTCATCGAGCGCCACGCGG GCGGTGTGCGCGGCGGCTGGGACAACCTGCTGGCCATCATCCCCGGAGGCA
genomic: GGAGGAGGAGATGTCCATTCCGCTCAAGGAGCTCATCGAGCGCCACGCGGgtgagaggag ... ccgcctgcagGCGGTGTGCGCGGCGGCTGGGACAACCTGCTGGCCATCATCCCCGGAGGCA
ccacccacgcacccacccgcccatgggtggccaccgcctcctctcccgcctgcagGCGGTGTGCGCGGCGGCTGGGACAACCTGCTGGCCATCATCCCCGGAGGCAGCTCCGTGCCGCTGCTGCCCAAGAAG
ccaccgcctcctctcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtgtgtccggtcgcggcattcgcccaacgctctggcgctccttccacccacgcacccacccgcccatgggtggccaccgcctcctctcccgcctgcagGCGGTGTGCGCGGCGGCTGGGACAACCTGCTGGCCATCATCCCCGGAGGCAGCTCCGTGCCGCTGCTGCCCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
-ggtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - cacgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgggtg