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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgggggaagcagggagccggggcatgcgggatgctgctggtaggttgcctgcgagtatgcatcatgagggaaaggcgaggttgcgagtgcccccgcccagggcgaaaaatgtcctcaatgcgcgtgtgcatgtgctgcgtggcctgggacatttttgcagGTGAGCCCCACCATTCTGCGCCGCGGCCCCGAGTGGTTCAGCTCTTTTGGCCGCAAGAACAACGCCGGCACCAAGCTGTTCTGCATCAGCGGCCACGTGA

Basic information

species Chlamydomonas reinhardtii
transcript EDP06369
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|239842179|gb|GR284036.1|GR284036
EST:     GCCTGTAC-GCTGCCCCCACCACCGTGACCNAATGTGGAGACCG-TGCGG                         GTGAGCCCCACCATTCTGCGCCGCGGCCCCGAGTGGTTCAGCTCTTTTGG
genomic: GCCTGTACGGCTG-CCCCACCACCGTGACC-AATGTGGAGACCGTTGC-Ggtgagtgggg ... atttttgcagGTGAGCCCCACCATTCTGCGCCGCGGCCCCGAGTGGTTCAGCTCTTTTGG
EST: gi|16434764|gb|BI999990.1|BI999990
EST:     TGGGCCTGTACGGCTGCCCCACCACCGTGACCAATGTGGAGACCGTTGCG                         GTGAGCCCCACCATTCTGCGCCGCGGCCCCGAGTGGT
genomic: TGGGCCTGTACGGCTGCCCCACCACCGTGACCAATGTGGAGACCGTTGCGgtgagtgggg ... atttttgcagGTGAGCCCCACCATTCTGCGCCGCGGCCCCGAGTGGT
EST: gi|16072662|gb|BI874658.1|BI874658
EST:     TGGGCCTGTACGGCTGCCCCACCACCGTGACCAATGTGGAGACCGTTGCG                         GTGAGCCCCACCATTCTGCGCCGCGGCCCCGAGTGGTTCAGCTCTTTTGGC
genomic: TGGGCCTGTACGGCTGCCCCACCACCGTGACCAATGTGGAGACCGTTGCGgtgagtgggg ... atttttgcagGTGAGCCCCACCATTCTGCGCCGCGGCCCCGAGTGGTTCAGCTCTTTTGGC
EST: gi|23365773|gb|BU653593.1|BU653593
EST:     TGGGCCTGTACGGCTGCCCCACCACCGTGACCAATGTGGAGACCGTTGCG                         GTGAGCCCCACCATTCTGCGCCGCGGCCCCGAGTGGTTCAGCTCTTTTGGC
genomic: TGGGCCTGTACGGCTGCCCCACCACCGTGACCAATGTGGAGACCGTTGCGgtgagtgggg ... atttttgcagGTGAGCCCCACCATTCTGCGCCGCGGCCCCGAGTGGTTCAGCTCTTTTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatgtcctcaatgcgcgtgtgcatgtgctgcgtggcctgggacatttttgcagGTGAGCCCCACCATTCTGCGCCGCGGCCCCGAGTGGTTCAGCTCTTTTGGCCGCAAGAACAACGCCGGCACCAAGCTGTTCTGCATCAGCGGCCACGTGA
                                            cattttt  CT-rich tract
                                           acattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgggggaagcagggagccggggcatgcgggatgctgctggtaggttgcctgcgagtatgcatcatgagggaaaggcgaggttgcgagtgcccccgcccagggcgaaaaatgtcctcaatgcgcgtgtgcatgtgctgcgtggcctgggacatttttgcagGTGAGCCCCACCATTCTGCGCCGCGGCCCCGAGTGGTTCAGCTCTTTTGGCCGCAAGAACAACGCCGGCACCAAGCTGTTCTGCATCAGCGGCCACGTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT