1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAGACCGCGAGATCATGCGCCACGAGCCGCACAAGCTGGTGGAGGGCTGCCTCATGGCGGGAGTGGCCATGGGCGCGCGCGCAGGCTACATCTACATCCGgtgggttgggtttggggtgggaggggacgcgcaggggcaggggctggggaaggggagggggcggtgtggcgcgggtgtggaggacgcggctgggctggga...
species | Chlamydomonas reinhardtii |
transcript | EDP06369 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCATGGCGGGAGTGGCCATGGGCGCGCGCGCAGGCTACATCTACATCCG TGGCGAGTTCGTGCAAGAGCGCCGCGCTGTGGAGCGCGCCATTAGCGAGGCEST: gi|239842178|gb|GR284035.1|GR284035
genomic: CTCATGGCGGGAGTGGCCATGGGCGCGCGCGCAGGCTACATCTACATCCGgtgggttggg ... atgtctgcagTGGCGAGTTCGTGCAAGAGCGCCGCGCTGTGGAGCGCGCCATTAGCGAGGC
EST: CTCATGGCGGGAGTGGCCATGGGCGCGCGCGCAGGCTACATCTACATCCG TGGCGAGTTCGTGCAAGAGCGCCGCGCTGTGGAGCGCGCCATTAGCGAGGCEST: gi|15701474|gb|BI725779.1|BI725779
genomic: CTCATGGCGGGAGTGGCCATGGGCGCGCGCGCAGGCTACATCTACATCCGgtgggttggg ... atgtctgcagTGGCGAGTTCGTGCAAGAGCGCCGCGCTGTGGAGCGCGCCATTAGCGAGGC
EST: CTCATGGCGGGAGTGGCCATGGGCGCGCGCGCAGGCTACATCTACATCCG TGGCGAGTTCGTGCAAGAGCGCCGCGCTGTGGAGCGCGCCATTAGCGAGGCEST: gi|16434764|gb|BI999990.1|BI999990
genomic: CTCATGGCGGGAGTGGCCATGGGCGCGCGCGCAGGCTACATCTACATCCGgtgggttggg ... atgtctgcagTGGCGAGTTCGTGCAAGAGCGCCGCGCTGTGGAGCGCGCCATTAGCGAGGC
EST: CTCATGGCGGGAGTGGCCATGGGCGCGCGCGCAGGCTACATCTACATCCG TGGCGAGTTCGTGCAAGAGCGCCGCGCTGTGGAGCGCGCCATTAGCGAGGCEST: gi|16072662|gb|BI874658.1|BI874658
genomic: CTCATGGCGGGAGTGGCCATGGGCGCGCGCGCAGGCTACATCTACATCCGgtgggttggg ... atgtctgcagTGGCGAGTTCGTGCAAGAGCGCCGCGCTGTGGAGCGCGCCATTAGCGAGGC
EST: GGCTACATCTACATCCG TGGCGAGTTCGTGCAAGAGCGCCGCGCTGTGGAGCGCGCCATTAGCGAGGC
genomic: GGCTACATCTACATCCGgtgggttggg ... atgtctgcagTGGCGAGTTCGTGCAAGAGCGCCGCGCTGTGGAGCGCGCCATTAGCGAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGACCGCGAGATCATGCGCCACGAGCCGCACAAGCTGGTGGAGGGCTGCCTCATGGCGGGAGTGGCCATGGGCGCGCGCGCAGGCTACATCTACATCCGgtgggttgggtttggggtgggaggggacgcgcaggggcaggggctggggaaggggagggggcggtgtggcgcgggtgtggaggacgcggctgggctggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtgtg