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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGCGTGCGGCAGCGGTGTGGACTTTGACCTGATGGTGCACTACGGCGCCGGCGCCTACATCTGCGGCGAGGAGACGGCGCTGATCGAGTCGCTGGAGGgtgaggagcagcagggggtggagacgcgatggacggggagggtggggtggggtggcgctggggaaagggagggccgggcccggggcgcaaactgggtgca...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06369
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|239841880|gb|GR283737.1|GR283737
EST:     CGCGC-TACATCTGCGGCGAGGAGACGGCGCTGATCGAGTCGCTGGGAGG                         GCAAGCAGGGGCA-GCCCCGCC
genomic: GGCGCCTACATCTGCGGCGAGGAGACGGCGCTGATCGAGTCGCTGG-AGGgtgaggagca ... ttccccacagGCAAGCAGGG-CAAGCCCCGCC
EST: gi|239842179|gb|GR284036.1|GR284036
EST:     GAGGAGACGGCGCTTATCAGA-TCGTTGGAGG                         GCAAGCAAGGCCAGCCCCGCCTCCAAGCCCCCGTTTCCCGCGGGTGTGGGC
genomic: GAGGAGACGGCGCTGATC-GAGTCGCTGGAGGgtgaggagca ... ttccccacagGCAAGCAGGGCAAGCCCCGCCT-CAAGCCCCCGTTCCCCGCGGGTGTGGGC
EST: gi|239842178|gb|GR284035.1|GR284035
EST:     GCGCCTACATCTGCGGGCGAGGAGACGGCGCTGATCGAGTCGCTGGGAGG                         GCAAGCAGGGCAAGCCC
genomic: GCGCCTACATCTGCGG-CGAGGAGACGGCGCTGATCGAGTCGCTGG-AGGgtgaggagca ... ttccccacagGCAAGCAGGGCAAGCCC
EST: gi|16434764|gb|BI999990.1|BI999990
EST:     CGGCGCCTACATCTGCGGCGAGGAGACGGCGCTGATCGAGTCGCTGGAGG                         GCAAGCAGGGCAAGCCCCGCCTCAAGCCCCCGTTCCCCGCGGGTGTGGGCC
genomic: CGGCGCCTACATCTGCGGCGAGGAGACGGCGCTGATCGAGTCGCTGGAGGgtgaggagca ... ttccccacagGCAAGCAGGGCAAGCCCCGCCTCAAGCCCCCGTTCCCCGCGGGTGTGGGCC
EST: gi|16072662|gb|BI874658.1|BI874658
EST:     CGGCGCCTACATCTGCGGCGAGGAGACGGCGCTGATCGAGTCGCTGGAGG                         GCAAGCAGGGCAAGCCCCGCCTCAAGCCCCCGTTCCCCGCGGGTGTGGGCC
genomic: CGGCGCCTACATCTGCGGCGAGGAGACGGCGCTGATCGAGTCGCTGGAGGgtgaggagca ... ttccccacagGCAAGCAGGGCAAGCCCCGCCTCAAGCCCCCGTTCCCCGCGGGTGTGGGCC
EST: gi|23365773|gb|BU653593.1|BU653593
EST:     CGGCGCCTACATCTGCGGCGAGGAGACGGCGCTGATCGAGTCGCTGGAGG                         GCAAGCAGGGCAAGCCCCGCCTCAAGCCCCCGTTCCCCGCGGGTGTGGGCC
genomic: CGGCGCCTACATCTGCGGCGAGGAGACGGCGCTGATCGAGTCGCTGGAGGgtgaggagca ... ttccccacagGCAAGCAGGGCAAGCCCCGCCTCAAGCCCCCGTTCCCCGCGGGTGTGGGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACGCGTGCGGCAGCGGTGTGGACTTTGACCTGATGGTGCACTACGGCGCCGGCGCCTACATCTGCGGCGAGGAGACGGCGCTGATCGAGTCGCTGGAGGgtgaggagcagcagggggtggagacgcgatggacggggagggtggggtggggtggcgctggggaaagggagggccgggcccggggcgcaaactgggtgca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtgc