1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAAGGTCAACTCCGCCGCCGACCTGAAGAAGGCGCTCACGCTGCTGGGCTCCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAGgtgaggggcggccgggggcgagagaggggcttaaggggcatggctgtacgggaggcacgctcacatggcgtgtggctgttctggttaacttgggctgctt...
species | Chlamydomonas reinhardtii |
transcript | EDO97201 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCGCCTCCCCCGACACGCTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAG GCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGACTTCCCCACCEST: gi|15704742|gb|BI729047.1|BI729047
genomic: CCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAGgtgaggggcg ... accgctccagGCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGATTTCCCCACC
EST: CCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAG GCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGATTTCCCCACCEST: gi|161805835|gb|FC092789.1|FC092789
genomic: CCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAGgtgaggggcg ... accgctccagGCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGATTTCCCCACC
EST: CCGCCTCCCCCGACACGCTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAG GCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGAEST: gi|16438408|gb|BM003628.1|BM003628
genomic: CCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAGgtgaggggcg ... accgctccagGCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGA
EST: CCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACCCCGCAG GCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGATTTCCCCACCEST: gi|7615289|gb|AW720737.1|AW720737
genomic: CCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAGgtgaggggcg ... accgctccagGCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGATTTCCCCACC
EST: CCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAG GCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGATTTCCCCACCEST: gi|15704743|gb|BI729048.1|BI729048
genomic: CCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAGgtgaggggcg ... accgctccagGCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGATTTCCCCACC
EST: CCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAG GCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGATTTCCCCACCEST: gi|14238380|gb|BG857196.1|BG857196
genomic: CCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAGgtgaggggcg ... accgctccagGCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGATTTCCCCACC
EST: CCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAG GCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGATTTCCCCACCEST: gi|15692208|gb|BI716513.1|BI716513
genomic: CCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAGgtgaggggcg ... accgctccagGCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGATTTCCCCACC
EST: CCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAG GCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGATTTCCCCACC
genomic: CCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAGgtgaggggcg ... accgctccagGCCGAGGGTGACAGCTACAGCAAGGACGAGCTGCTGGGCGATTTCCCCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGTCAACTCCGCCGCCGACCTGAAGAAGGCGCTCACGCTGCTGGGCTCCGCCTCGCCCGACACACTGCTGGCCTTTGAGCTGCTGTGGACGCCGCAGgtgaggggcggccgggggcgagagaggggcttaaggggcatggctgtacgggaggcacgctcacatggcgtgtggctgttctggttaacttgggctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctggtt