1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCACGGCCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggggcgcgagcgcagtagctttgccggtgtgtgcgtgtatcctgtgggtgggcaaatgggtggtgggagaaggcgcgtgcggattatgatgctttgctagtgtggcacgccgccataagttcctcactgccttcttatctactag
species | Chlamydomonas reinhardtii |
transcript | EDO97201 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAG GTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTGEST: gi|15691925|gb|BI716230.1|BI716230
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
EST: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAG GTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTGEST: gi|15373328|gb|BI532754.1|BI532754
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
EST: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGT-CAACCAG GTGTCCCTGGAGGAGCGCAGCAAGTTCATAGAGGAGACGTTCTCCAACGTGEST: gi|9441247|gb|BE441851.1|BE441851
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
EST: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAG GTGTCCCTGGAGGAGCGCAGCAAGTTCAAGGAGGAGACGTTCTCCAATGTGEST: gi|15704742|gb|BI729047.1|BI729047
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
EST: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAG GTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTGEST: gi|161805835|gb|FC092789.1|FC092789
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
EST: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAG GTGTCCCTGGAGGAGCGCAGCAAGTTCAAGGAGGAGACGTTCTCCAATGTGEST: gi|15704743|gb|BI729048.1|BI729048
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
EST: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAG GTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTGEST: gi|15692209|gb|BI716514.1|BI716514
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
EST: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAG GTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCACGGCCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggggcgcgagcgcagtagctttgccggtgtgtgcgtgtatcctgtgggtgggcaaatgggtggtgggagaaggcgcgtgcggattatgatgctttgctagtgtggcacgccgccataagttcctcactgccttcttatctactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT