1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGCATGTTCGGCGACGTGAAGAAGTGGCAGAAGGACCTGGAGCGCCTGTCCGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGGgtgagggcgagagggggtacgtgcccgagaggtcccaagagaccaggaatcgtcgcccaacccagaaatgcagtgcgagctccacgggagggggaggggg...
species | Chlamydomonas reinhardtii |
transcript | EDO97201 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGG ACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCAEST: gi|15691925|gb|BI716230.1|BI716230
genomic: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGGgtgagggcga ... cacctggcagACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCA
EST: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGG ACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCAEST: gi|15373328|gb|BI532754.1|BI532754
genomic: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGGgtgagggcga ... cacctggcagACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCA
EST: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGG ACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCAEST: gi|9441247|gb|BE441851.1|BE441851
genomic: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGGgtgagggcga ... cacctggcagACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCA
EST: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGG ACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCAEST: gi|161805835|gb|FC092789.1|FC092789
genomic: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGGgtgagggcga ... cacctggcagACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCA
EST: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGG ACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCAEST: gi|6542556|gb|AV388340.1|AV388340
genomic: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGGgtgagggcga ... cacctggcagACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCA
EST: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGG ACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCAEST: gi|15692209|gb|BI716514.1|BI716514
genomic: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGGgtgagggcga ... cacctggcagACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCA
EST: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGG ACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCAEST: gi|161817585|gb|FC103241.1|FC103241
genomic: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGGgtgagggcga ... cacctggcagACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCA
EST: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGG ACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCA
genomic: CGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGGgtgagggcga ... cacctggcagACACGGTGACCAAGCTGCTCCGCAACATGGAGTACATCTCGTACGCGGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCATGTTCGGCGACGTGAAGAAGTGGCAGAAGGACCTGGAGCGCCTGTCCGAGCAGTTCGACACGGAGGACGAGGAGGGGCTGCACTACATCCTGCAGGgtgagggcgagagggggtacgtgcccgagaggtcccaagagaccaggaatcgtcgcccaacccagaaatgcagtgcgagctccacgggagggggaggggg
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgca