Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggggggggcgcgagcgcagtagctttgccggtgtgtgcgtgtatcctgtgggtgggcaaatgggtggtgggagaaggcgcgtgcggattatgatgctttgctagtgtggcacgccgccataagttcctcactgccttcttatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTGGACGGCCGCCGCCGCACGCGGGCTCTGGATGTGTCTAGCAGCCCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97201
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16434220|gb|BI999446.1|BI999446
EST:     CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAG                         GTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
EST: gi|15691925|gb|BI716230.1|BI716230
EST:     CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAG                         GTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
EST: gi|15373328|gb|BI532754.1|BI532754
EST:     CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGT-CAACCAG                         GTGTCCCTGGAGGAGCGCAGCAAGTTCATAGAGGAGACGTTCTCCAACGTG
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
EST: gi|9441247|gb|BE441851.1|BE441851
EST:     CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAG                         GTGTCCCTGGAGGAGCGCAGCAAGTTCAAGGAGGAGACGTTCTCCAATGTG
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
EST: gi|15704742|gb|BI729047.1|BI729047
EST:     CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAG                         GTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
EST: gi|161805835|gb|FC092789.1|FC092789
EST:     CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAG                         GTGTCCCTGGAGGAGCGCAGCAAGTTCAAGGAGGAGACGTTCTCCAATGTG
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
EST: gi|15704743|gb|BI729048.1|BI729048
EST:     CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAG                         GTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
EST: gi|15692209|gb|BI716514.1|BI716514
EST:     CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAG                         GTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG
genomic: CCGGCAAGGTGTACGACAACCTGGACGAGTGCGAGCAGAAGTTCAACCAGgtgggggggg ... tatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttgctagtgtggcacgccgccataagttcctcactgccttcttatctactagGTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTGGACGGCCGCCGCCGCACGCGGGCTCTGGATGTGTCTAGCAGCCCCG
                              tcctcac  putative branch site (score: 2)
                             ttcctcactgccttct  CT-rich tract
                        ataagtt  TA-rich tract