1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTGGACGGCCGCCGCCGCACGCGGGCTCTGGATGTGTCTAGCAGCCCCGgtgagcggtgcggaggcggcgagcggcagggagcacagcagcagggcttgctcagaggcgaagtcacgggatggcgtcgcgaggggacaaaggaggaccg...
species | Chlamydomonas reinhardtii |
transcript | EDO97201 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGTGGACGGTCGTCGTCGCACGCGGGCTCTGGATGTGTCTAGCAGCCCCG ACGTGGGCCTGGACACGTGGCTGTGCTGCACGCTGGTGGTGGCGGTGGAGGEST: gi|15691925|gb|BI716230.1|BI716230
genomic: CGTGGACGGCCGCCGCCGCACGCGGGCTCTGGATGTGTCTAGCAGCCCCGgtgagcggtg ... acacacacagACGTGGGCCTGGACACGTGGCTGTGCTGCACGCTGGTGGTGGCGGTGGAGG
EST: CGTGGACGGCCGCCGCCGCACGCGGGCTCTGGATGTGTCTAGCAGCCCCG ACGTGGGCCTGGACACGTGGCTGTGCTGCACGCTGGTGGTGGCGGTGGAGGEST: gi|9441247|gb|BE441851.1|BE441851
genomic: CGTGGACGGCCGCCGCCGCACGCGGGCTCTGGATGTGTCTAGCAGCCCCGgtgagcggtg ... acacacacagACGTGGGCCTGGACACGTGGCTGTGCTGCACGCTGGTGGTGGCGGTGGAGG
EST: TGTGGACGGCCGCCGCCGCACGCGGGCACTGGATGTGTCTAGCAGCCCCG ACGTGGGCCTGGACACGTGGCTGTGCTGCACGCTGGTGGTGGCGGTGGAGGEST: gi|15704742|gb|BI729047.1|BI729047
genomic: CGTGGACGGCCGCCGCCGCACGCGGGCTCTGGATGTGTCTAGCAGCCCCGgtgagcggtg ... acacacacagACGTGGGCCTGGACACGTGGCTGTGCTGCACGCTGGTGGTGGCGGTGGAGG
EST: CGTGGACGGCCGCCGCCGCACGCGGGCTCTGGATGTGTCTAGCAGCCCCG ACGTGGGCCTGGACACGTGGCTGTGCTGCACGCTGGTGGTGGCGGTGGAGGEST: gi|161805835|gb|FC092789.1|FC092789
genomic: CGTGGACGGCCGCCGCCGCACGCGGGCTCTGGATGTGTCTAGCAGCCCCGgtgagcggtg ... acacacacagACGTGGGCCTGGACACGTGGCTGTGCTGCACGCTGGTGGTGGCGGTGGAGG
EST: TGTGGACGGCCGCCGCCGCACGCGGGCACTGGATGTGTCTAGCAGCCCCG ACGTGGGCCTGGACACGTGGCTGTGCTGCACGCTGGTGGTGGCGGTGGAGGEST: gi|15704743|gb|BI729048.1|BI729048
genomic: CGTGGACGGCCGCCGCCGCACGCGGGCTCTGGATGTGTCTAGCAGCCCCGgtgagcggtg ... acacacacagACGTGGGCCTGGACACGTGGCTGTGCTGCACGCTGGTGGTGGCGGTGGAGG
EST: CGTGGACGGCCGCCGCCGCACGCGGGCTCTGGATGTGTCTAGCAGCCCCG ACGTGGGCCTGGACACGTGGCTGTGCTGCACGCTGGTGGTGGCGGTGGAGGEST: gi|14238380|gb|BG857196.1|BG857196
genomic: CGTGGACGGCCGCCGCCGCACGCGGGCTCTGGATGTGTCTAGCAGCCCCGgtgagcggtg ... acacacacagACGTGGGCCTGGACACGTGGCTGTGCTGCACGCTGGTGGTGGCGGTGGAGG
EST: GGCTCTGGATGTGTCTAACAGGCCCCA ACGT-GGCCTGGGCCACGTGGCTGTGCTGCACGCTGGTGGTGGCGGTGGA
genomic: GGCTCTGGATGTGTCTAGCA-GCCCCGgtgagcggtg ... acacacacagACGTGGGCCT-GGACACGTGGCTGTGCTGCACGCTGGTGGTGGCGGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTCCCTGGAGGAGCGCAGCAAGTTCAAAGAGGAGACGTTCTCCAACGTGGACGGCCGCCGCCGCACGCGGGCTCTGGATGTGTCTAGCAGCCCCGgtgagcggtgcggaggcggcgagcggcagggagcacagcagcagggcttgctcagaggcgaagtcacgggatggcgtcgcgaggggacaaaggaggaccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcagca