1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCACTAAACCGGCCTGTACTGCTCGTTGCGGTGCTCGCACAGAATCCATCGCTGGAAGATGATGCTGGCCCAGAAGAACGGCGTTGTTTGCAAGCAGCAGgtgaggtgtgttgcacggaggggcgcgatggatggcttggtgcagatcgacagggacgcgaggggccatccgctggtacagcgcagacagaccgctgtga...
species | Chlamydomonas reinhardtii |
transcript | EDO97201 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTGGAAGATGATGCTGGCCCAGAAGAACGGCGTTGTTTGCAAGCAGCAG GCCCGCCTGCTGTCCACGCCGGCTGTGAGCGCGCGTTCCGCCGCCCGCGCCEST: gi|15373328|gb|BI532754.1|BI532754
genomic: GCTGGAAGATGATGCTGGCCCAGAAGAACGGCGTTGTTTGCAAGCAGCAGgtgaggtgtg ... ctaccgacagGCCCGCCTGCTGTCCACGCCGGCTGTGAGCGCGCGTTCCGCCGCCCGCGCC
EST: GCTGGAAGATGATGCTGGCCCAGAAGAACGGCGTTGTTTGCAAGCAGCAG GCCCGCCTGCTGTCCACGCCGGCTGTGAGCGCGCGTTCCGCCGCCCGCGCCEST: gi|15692209|gb|BI716514.1|BI716514
genomic: GCTGGAAGATGATGCTGGCCCAGAAGAACGGCGTTGTTTGCAAGCAGCAGgtgaggtgtg ... ctaccgacagGCCCGCCTGCTGTCCACGCCGGCTGTGAGCGCGCGTTCCGCCGCCCGCGCC
EST: GCTGGAAGATGATGCTGGCCCAGAAGAACGGCGTTGTTTGCAAGCAGCAG GCCCGCCTGCTGTCCACGCCGGCTGTGAGCGCGCGTTCCGCCGCCCGCGCCEST: gi|161817585|gb|FC103241.1|FC103241
genomic: GCTGGAAGATGATGCTGGCCCAGAAGAACGGCGTTGTTTGCAAGCAGCAGgtgaggtgtg ... ctaccgacagGCCCGCCTGCTGTCCACGCCGGCTGTGAGCGCGCGTTCCGCCGCCCGCGCC
EST: GCTGGAAGATGATGCTGGCCCAGAAGAGCGGCGTTGTTTGCAAGCAGCAG GCCCGCCTGCTGTCCACGCCGGCTGTGAGCGCGCGCTCCGCCGCCCGCGCC
genomic: GCTGGAAGATGATGCTGGCCCAGAAGAACGGCGTTGTTTGCAAGCAGCAGgtgaggtgtg ... ctaccgacagGCCCGCCTGCTGTCCACGCCGGCTGTGAGCGCGCGTTCCGCCGCCCGCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACTAAACCGGCCTGTACTGCTCGTTGCGGTGCTCGCACAGAATCCATCGCTGGAAGATGATGCTGGCCCAGAAGAACGGCGTTGTTTGCAAGCAGCAGgtgaggtgtgttgcacggaggggcgcgatggatggcttggtgcagatcgacagggacgcgaggggccatccgctggtacagcgcagacagaccgctgtga
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagacc