1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cacaccacggctagcatgatccgtgcgcgggatagcgccggattggcactttagttgcatttaagctaaccgaaataaaccggcttcccgcgaaatgcagATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAG
species | Chlamydomonas reinhardtii |
transcript | EDO97201 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG ATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAGEST: gi|15691925|gb|BI716230.1|BI716230
genomic: GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTGgtgagttgcg ... cgaaatgcagATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAG
EST: GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG ATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAGEST: gi|15373328|gb|BI532754.1|BI532754
genomic: GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTGgtgagttgcg ... cgaaatgcagATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAG
EST: GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG ATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAGEST: gi|161805835|gb|FC092789.1|FC092789
genomic: GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTGgtgagttgcg ... cgaaatgcagATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAG
EST: GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG ATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAGEST: gi|6542556|gb|AV388340.1|AV388340
genomic: GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTGgtgagttgcg ... cgaaatgcagATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAG
EST: GGCTTTGGCGGTG ATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAGEST: gi|15692209|gb|BI716514.1|BI716514
genomic: GGCTTTGGCGGTGgtgagttgcg ... cgaaatgcagATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAG
EST: GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG ATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAGEST: gi|161817585|gb|FC103241.1|FC103241
genomic: GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTGgtgagttgcg ... cgaaatgcagATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAG
EST: GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG ATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAG
genomic: GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTGgtgagttgcg ... cgaaatgcagATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAG
gcactttagttgcatttaagctaaccgaaataaaccggcttcccgcgaaatgcagATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAG
agctaac putative branch site (score: 2)
cttcccgc putative PPT
aaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacaccacggctagcatgatccgtgcgcgggatagcgccggattggcactttagttgcatttaagctaaccgaaataaaccggcttcccgcgaaatgcagATGACGAGGACTATGAGGAGAACTACACGGTCATGAAGGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
-acaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa