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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgactacgggaggctttggtgttgccttactgaaagttacgcacgccatgggcaaactgctgtacgctatgtgcccaattgagacgtcagcctgacttcacagttgctgatgcgcatgccgacggcagcagccctgcatcgtaccccatgccttcgtaccttcatgccgcaactttcgcagGACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97201
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16434220|gb|BI999446.1|BI999446
EST:     CTGCCCACAGCGGTCGCCGCGGCCAGTCCATCCA                         GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG
genomic: CTGCCCACAGCGGTCGCCGCGGCCAGTCCATCCAgtaagtgact ... actttcgcagGACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG
EST: gi|15691925|gb|BI716230.1|BI716230
EST:     GTCTGCGCTTCCCGCCCTGCCCACAGCGGTCGCCGCGGCCAGTCCATCCA                         GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG
genomic: GTCTGCGCTTCCCGCCCTGCCCACAGCGGTCGCCGCGGCCAGTCCATCCAgtaagtgact ... actttcgcagGACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG
EST: gi|15373328|gb|BI532754.1|BI532754
EST:     GTCTGCGCTTCCCGCCCTGCCCACAGCGGTCGCCGCGGCCAGTCCATCCA                         GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG
genomic: GTCTGCGCTTCCCGCCCTGCCCACAGCGGTCGCCGCGGCCAGTCCATCCAgtaagtgact ... actttcgcagGACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG
EST: gi|161805835|gb|FC092789.1|FC092789
EST:     GTCCGCGCTGCCCGCCCTGCCCACAGCGGTCGCCGCGGCCAGTCCATCCA                         GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG
genomic: GTCTGCGCTTCCCGCCCTGCCCACAGCGGTCGCCGCGGCCAGTCCATCCAgtaagtgact ... actttcgcagGACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG
EST: gi|15692209|gb|BI716514.1|BI716514
EST:     GTCTGCGCTTCCCGCCCTGCCCACAGCGGTCGCCGCGGCCAGTCCATCCA                         GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG
genomic: GTCTGCGCTTCCCGCCCTGCCCACAGCGGTCGCCGCGGCCAGTCCATCCAgtaagtgact ... actttcgcagGACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG
EST: gi|161817585|gb|FC103241.1|FC103241
EST:     GTCCGCGCTGCCCGCCCTGCCCACAGCGGTCGCCGCGGCCAGTCCATCCA                         GACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG
genomic: GTCTGCGCTTCCCGCCCTGCCCACAGCGGTCGCCGCGGCCAGTCCATCCAgtaagtgact ... actttcgcagGACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcagccctgcatcgtaccccatgccttcgtaccttcatgccgcaactttcgcagGACCGAGGCCGTTGCTCGGCCTTCGGTGTACTTCTTCGGCTTTGGCGGTG
                                              ctttcgc  CT-rich tract