Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGTACAGAGACTTGATCTTTCCAAATCAAAAGCCTCTGTGCTTGCTTCGgttagtcaatatgttctttcagcatatttgtacttcaatttggatcctgttcgattagagattccctatgatgatataccaaatttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G51660.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G51660.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA16G32890.1 (Glycine max), 5'ss of exon 9
TGCTGTACAGAGACTTGATCTTTCCAAATCAAAAGCCTCTGTGCTTGCTTCGgttagtcaatatgttctttcagcatatttgtact----tcaatttggatcctgttcgattaga---gattccctatgatgatataccaaatttcttgcag--------------------
 | |||||||||||||||||||||||| |||||||| || || ||  | || || |||    |  || |       | ||  |  |    |  ||||| |||          |||     ||   | | ||  |   |  | ||| ||  |                     
GGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTgtaagtttgaaaattttacatttttgttaatgttgttgtagatttgaatctaacctttacagattaatttaattttcatattgaccttagttttttttaatatctgcaaaattatgttag

upper sequence: AT5G51660.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA09G28030.1 (Glycine max), 5'ss of exon 9
TGCTGTACAGAGACTTGATCTTTCCAAATCAAAAGCCTCTGTGCTTGCTTCGgttagtcaatatgttctttcagcat-atttgtact----tcaatttggatcctgttcgattaga--gattccctatgatgatataccaaatttcttgcag
 | |||||||||||||||||||||||| |||||||| || || ||  | || || |||    |  |||||||    |  ||  |  |    |  ||||| |||          |||   |||   | | |  || |   ||| |   |  ||
GGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTgtaagtttgaaaattctttcctttttgttaatgttgttatagatttgaatctaacctttacagattaatttttttttaatatctgtaaaaatatgt-tag