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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCGGGTCTGAACCCACTCGCTTTCCGTCAATTTCGCTCAAGTGGGAAGGCTCGACGATCTGGGCCTGACAGCATAGTTGACTGCGAGTTACTATGCCAgtaagttttcttccgcattctatatgttcaaacggtagtaacagacatatgacaaaatggacctcaaagtagagagagcacataggataataaactcgaaaatcacacgatagaaggatcatagatgcatatcctcatggttttgaaaacattttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G51660.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G51660.1 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: GLYMA09G28030.1 (Glycine max), 5'ss of exon 25
TTGCGGGTCTGAACCCACTCGCTTTCCGTCAATTTCGCTCAAGTGGGAAGGCTCGACGATCTGGGCCTGACAGCATAGTTGACTGCGAGTTACTATGCCAgtaagtttt-cttccgcattctatatgttcaaacggtagtaacagacatatgacaaaatggacctcaaagtagagagagcacataggataataaactcgaaaatcacacgatagaaggatcatagatgcatatcctcatggttttgaaaacattttgcag
|||| || ||||||||    |||||| |   |||||| |||| ||| ||||| |  ||  | || |||||||| |||||||| |||||| | |||||||||||||||||   | |      |||   |  |   |||| | | | |   ||  |||| ||    ||  | || | |       ||  | || |||   |  | ||                                                       
TTGCTGGCCTGAACCCCAGAGCTTTCAGATTATTTCGGTCAAATGGAAAGGCCCATCGGCCAGGCCCTGACAGTATAGTTGATTGCGAGCTGCTATGCCAgtaagttttatcttcagccagtattactgtatgtggtattgagaaatggatatcaaactgagagtcttattaaaaaat-----taaaagaaaaaagctgttattc-------------------------------------------------------

upper sequence: AT5G51660.1 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: Vv16s0022g01860.t01 (Vitis vinifera), 5'ss of exon 25
TTGCGGGTCTGAACCCACTCGCTTTCCGTCAATTTCGCTCAAGTGGGAAGGCTCGACGATCTGGGCCTGACAGCATAGTTGACTGCGAGTTACTATGCCAgtaagtt-ttcttccgc---attctatatgttcaaacggtagtaacagacatatgacaaaatggacctcaaagtagagagagcacataggataataaactcgaaaatcacacgatagaaggatcatagatgcatatcctcatggttttgaaaacattttgcag
|||| || || ||||||    ||||||| || || ||||||| ||| |||||||  ||| |||| ||||||| |||||||||||| ||| | || |||||||||||| || ||  |    |  || |   ||| || || |  |||   |||    ||  |||    ||     ||  |   ||  |  |    |   ||                                                               
TTGCTGGACTCAACCCAAGATCTTTCCGCCAGTTCCGCTCAAATGGCAAGGCTCATCGACCTGGCCCTGACAACATAGTTGACTGTGAGCTGCTCTGCCAgtaagttgtttttttgttaaaacctctgatttctaaagggaacaactc-cattatccatgatgatgttctcgtcagtta---catttgtgtcttttctcttttt-----------------------------------------------------------