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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttcttccgcattctatatgttcaaacggtagtaacagacatatgacaaaatggacctcaaagtagagagagcacataggataataaactcgaaaatcacacgatagaaggatcatagatgcatatcctcatggttttgaaaacattttgcagTTACGAGATGCTTCCATTGGAGGAACAGCTTGAACTTGCTCACCAGATTGGGACAACCCGATATTCGATTCTCAAGGATTTAGTTGATCTCTCTGTCGGA

Basic information

species Arabidopsis thaliana
transcript AT5G51660.1
intron # 25
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G51660.1 (Arabidopsis thaliana), 3'ss of exon 25
lower sequence: GLYMA09G28030.1 (Glycine max), 3'ss of exon 25
gtaagttttcttccgcattctatatgttcaaacggtagtaacagacatatgacaaaatggacctcaaagtagagagagcacataggataataaactcgaaaatcacacgatagaaggatcatagatgcatatcctcatggttttgaaaacattttgcagTTACGAGATGCTTCCATTGGAGGAACAGCTTGAACTTGCTCACCAGATTGGGACAACCCGATATTCGATTCTCAAGGATTTAGTTGATCTCTCTGTCGGA
                                     ||  |||| || | |||   | | | |  |  |          |||    ||||||  |   |  ||      | |||   | | |  ||| |       |||| ||       | || |||||| || ||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||     |||||     || ||   ||||| ||| | |||
-----------------------------------ctgtttcagatattt-acatttttgtcttttatat--------ttcat----taataatatgcgagctccttgttttgaaacgtaaaatctgcct-------tggtcttc----tttgttacagTTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTAACCAGATTGGAACAACTCGATCACAAATTCTGTCAAATCTAAGCGATCTGTCTCTTGGA

upper sequence: AT5G51660.1 (Arabidopsis thaliana), 3'ss of exon 25
lower sequence: GLYMA16G32890.1 (Glycine max), 3'ss of exon 25
gtaagttttcttccgcattctatatgttcaaacggtagtaacagacatatgacaaaatggacctcaaagtagagagagcacataggataataaactcgaaaatcacacgatagaaggatcatagatgcatatcctcatggttttgaaaacattttgcagTTACGAGATGCTTCCATTGGAGGAACAGCTTGAACTTGCTCACCAGATTGGGACAACCCGATATTCGATTCTCAAGGATTTAGTTGATCTCTCTGTCGGA
                                                       |    ||||     |  | |     | |   ||| |  |||   ||    |  | |    |  |   |     | |||  | |||| ||       | || |||||| || ||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||     |||||     || ||  |||||| ||| | |||
------------------------------------------------------taccttacctgtctattcacaattttc-tcttatatttcactaataatatgcgagttccttgttttgaaacgtaaaatctgcctggtcttc----tttattacagTTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTCACCAGGTTGGAACAACTCGATCACAAATTCTGTCAAATCTAAGTGATCTGTCTCTTGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacgatagaaggatcatagatgcatatcctcatggttttgaaaacattttgcagTTACGAGATGCTTCCATTGGAGGAACAGCTTGAACTTGCTCACCAGATTGGGACAACCCGATATTCGATTCTCAAGGATTTAGTTGATCTCTCTGTCGGA
                                    ttttgaaaacatttt  TA-rich tract